FRED and HYBRID docking performance on standardized datasets

Article Properties
Refrences
Title Journal Journal Categories Citations Publication Date
FRED Pose Prediction and Virtual Screening Accuracy Journal of Chemical Information and Modeling
  • Medicine: Therapeutics. Pharmacology
  • Science: Chemistry: General. Including alchemy
  • Science: Science (General): Cybernetics: Information theory
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Science: Chemistry
517 2011
Protein Kinases: Docking and Homology Modeling Reliability Journal of Chemical Information and Modeling
  • Medicine: Therapeutics. Pharmacology
  • Science: Chemistry: General. Including alchemy
  • Science: Science (General): Cybernetics: Information theory
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Science: Chemistry
49 2010
Conformer Generation with OMEGA: Algorithm and Validation Using High Quality Structures from the Protein Databank and Cambridge Structural Database Journal of Chemical Information and Modeling
  • Medicine: Therapeutics. Pharmacology
  • Science: Chemistry: General. Including alchemy
  • Science: Science (General): Cybernetics: Information theory
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Science: Chemistry
1,157 2010
Comparison of Several Molecular Docking Programs: Pose Prediction and Virtual Screening Accuracy Journal of Chemical Information and Modeling
  • Medicine: Therapeutics. Pharmacology
  • Science: Chemistry: General. Including alchemy
  • Science: Science (General): Cybernetics: Information theory
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Science: Chemistry
294 2009
Recommendations for evaluation of computational methods Journal of Computer-Aided Molecular Design
  • Science: Biology (General)
  • Science: Biology (General)
  • Science: Physics
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Science: Chemistry: Analytical chemistry
  • Science: Chemistry
219 2008
Refrences Analysis
The category Science: Chemistry 12 is the most frequently represented among the references in this article. It primarily includes studies from Journal of Chemical Information and Modeling and Journal of Medicinal Chemistry. The chart below illustrates the number of referenced publications per year.
Refrences used by this article by year
Citations
Title Journal Journal Categories Citations Publication Date
Neuroblastoma and its Target Therapies: A Medicinal Chemistry Review

ChemMedChem
  • Medicine: Therapeutics. Pharmacology
  • Medicine: Therapeutics. Pharmacology
  • Medicine: Public aspects of medicine: Toxicology. Poisons
2024
Quantitative clustering and matching of conformers using average electron densities Arabian Journal of Chemistry
  • Science: Chemistry
  • Science: Chemistry: General. Including alchemy
  • Science: Chemistry
2024
Novel sulfonyl-substituted tetrandrine derivatives for colon cancer treatment by inducing mitochondrial apoptosis and inhibiting PI3K/AKT/mTOR pathway Bioorganic Chemistry
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry
  • Science: Chemistry: Analytical chemistry
  • Technology: Chemical technology: Polymers and polymer manufacture
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
2024
Identification of new multi-substituted 1H-pyrazolo[3,4-c]pyridin-7(6H)-ones as soluble guanylyl cyclase (sGC) stimulators with vasoprotective and anti-inflammatory activities Bioorganic Chemistry
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry
  • Science: Chemistry: Analytical chemistry
  • Technology: Chemical technology: Polymers and polymer manufacture
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
2024
Discovery of two non-UDP-mimic inhibitors of O-GlcNAc transferase by screening a DNA-encoded library Bioorganic Chemistry
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry
  • Science: Chemistry: Analytical chemistry
  • Technology: Chemical technology: Polymers and polymer manufacture
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
2024
Citations Analysis
Category Category Repetition
Science: Chemistry162
Medicine: Therapeutics. Pharmacology132
Science: Biology (General)122
Science: Chemistry: General. Including alchemy101
Science: Chemistry: Analytical chemistry68
Medicine: Public aspects of medicine: Toxicology. Poisons59
Science: Mathematics: Instruments and machines: Electronic computers. Computer science56
Science: Chemistry: Organic chemistry: Biochemistry53
Science: Chemistry: Organic chemistry44
Science: Science (General): Cybernetics: Information theory30
Science: Physics25
Science: Microbiology16
Science: Science (General)15
Medicine: Medicine (General): Computer applications to medicine. Medical informatics14
Technology: Chemical technology: Polymers and polymer manufacture13
Medicine: Pharmacy and materia medica11
Medicine: Medicine (General)8
Science: Biology (General): Cytology7
Science7
Medicine: Internal medicine: Infectious and parasitic diseases6
Science: Chemistry: Physical and theoretical chemistry6
Medicine6
Agriculture: Plant culture5
Agriculture: Animal culture5
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the endocrine glands. Clinical endocrinology4
Medicine: Internal medicine: Neoplasms. Tumors. Oncology. Including cancer and carcinogens4
Science: Chemistry: Crystallography4
Science: Botany: Plant ecology3
Agriculture: Agriculture (General)3
Technology: Chemical technology: Food processing and manufacture3
Geography. Anthropology. Recreation: Environmental sciences3
Medicine: Medicine (General): Medical technology3
Science: Physics: Atomic physics. Constitution and properties of matter3
Technology: Technology (General): Industrial engineering. Management engineering: Information technology3
Medicine: Internal medicine: Specialties of internal medicine: Immunologic diseases. Allergy2
Medicine: Other systems of medicine2
Technology: Chemical technology: Biotechnology2
Agriculture2
Science: Zoology2
Science: Botany2
Technology: Home economics: Nutrition. Foods and food supply2
Science: Chemistry: Inorganic chemistry2
Technology: Environmental technology. Sanitary engineering2
Science: Biology (General): Ecology2
Science: Biology (General): Genetics2
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry2
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the respiratory system1
Medicine: Dermatology1
Science: Physiology1
Science: Physics: Nuclear and particle physics. Atomic energy. Radioactivity1
Education: Education (General)1
Agriculture: Animal culture: Veterinary medicine1
Medicine: Public aspects of medicine1
Medicine: Internal medicine: Special situations and conditions: Industrial medicine. Industrial hygiene1
Medicine: Internal medicine1
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry: Neurology. Diseases of the nervous system: Psychiatry1
Medicine: Internal medicine: Special situations and conditions: Arctic medicine. Tropical medicine1
Science: Physiology: Animal biochemistry1
Technology: Chemical technology: Chemical engineering1
Medicine: Internal medicine: Specialties of internal medicine: Nutritional diseases. Deficiency diseases1
The category Science: Chemistry 162 is the most commonly referenced area in studies that cite this article. The first research to cite this article was titled Integrating Ligand-Based and Protein-Centric Virtual Screening of Kinase Inhibitors Using Ensembles of Multiple Protein Kinase Genes and Conformations and was published in 2012. The most recent citation comes from a 2024 study titled Synthesis and anti-inflammatory activity of benzimidazole derivatives; an In vitro, in vivo and in silico approach. This article reached its peak citation in 2023, with 47 citations. It has been cited in 141 different journals, 21% of which are open access. Among related journals, the Journal of Chemical Information and Modeling cited this research the most, with 27 citations. The chart below illustrates the annual citation trends for this article.
Citations used this article by year