| 56 | Research electronic data capture (REDCap)—A metadata-driven methodology and workflow process for providing translational research informatics support | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Medicine: Medicine (General): Medical technology
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
| 2009/04/01 | English | 29,964 |
| 164 | SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry: Organic chemistry: Biochemistry
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
- Science: Mathematics: Probabilities. Mathematical statistics
- Technology: Chemical technology: Biotechnology
| 2012/05/01 | English | 16,322 |
| 250 | WGCNA: an R package for weighted correlation network analysis | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry: Organic chemistry: Biochemistry
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
- Technology: Chemical technology: Biotechnology
| 2008/12/01 | English | 12,981 |
| 263 | RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry: Organic chemistry: Biochemistry
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
- Technology: Chemical technology: Biotechnology
| 2011/08/04 | English | 12,653 |
| 317 | BLAST+: architecture and applications | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry: Organic chemistry: Biochemistry
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
- Technology: Chemical technology: Biotechnology
| 2009/12/01 | English | 11,184 |
| 382 | The REDCap consortium: Building an international community of software platform partners | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Medicine: Medicine (General): Medical technology
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
| 2019/07/01 | English | 10,177 |
| 468 | MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry: Organic chemistry: Biochemistry
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
| 2004/01/01 | English | 9,117 |
| 487 | Simultaneous Inference in General Parametric Models | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Mathematics
- Science: Mathematics: Probabilities. Mathematical statistics
| 2008/06/01 | English | 8,946 |
| 627 | The ORCA program system | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry
- Science: Chemistry: General. Including alchemy
| 2011/06/28 | English | 7,876 |
| 655 | Exploration, normalization, and summaries of high density oligonucleotide array probe level data | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Mathematics
- Science: Mathematics: Probabilities. Mathematical statistics
| 2003/04/01 | | 7,724 |
| 743 | pROC: an open-source package for R and S+ to analyze and compare ROC curves | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry: Organic chemistry: Biochemistry
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
- Technology: Chemical technology: Biotechnology
| 2011/03/17 | English | 7,111 |
| 884 | GSVA: gene set variation analysis for microarray and RNA-Seq data | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry: Organic chemistry: Biochemistry
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
- Technology: Chemical technology: Biotechnology
| 2013/01/16 | English | 6,537 |
| 935 | Prodigal: prokaryotic gene recognition and translation initiation site identification | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
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| 2010/03/08 | English | 6,339 |
| 1066 | MUSCLE: a multiple sequence alignment method with reduced time and space complexity | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry: Organic chemistry: Biochemistry
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- Technology: Chemical technology: Biotechnology
| 2004/08/19 | English | 5,929 |
| 1140 | Second-generation PLINK: rising to the challenge of larger and richer datasets | |
- Agriculture: Plant culture
- Science: Biology (General)
- Science: Science (General)
| 2015/02/25 | English | 5,730 |
| 1278 | FieldTrip: Open Source Software for Advanced Analysis of MEG, EEG, and Invasive Electrophysiological Data | |
- Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
| 2011/01/01 | English | 5,410 |
| 1283 | Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
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- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
| 2012/04/19 | English | 5,402 |
| 1634 | Genome sequence-based species delimitation with confidence intervals and improved distance functions | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
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- Technology: Chemical technology: Biotechnology
| 2013/02/21 | English | 4,726 |
| 1695 | Adjusting batch effects in microarray expression data using empirical Bayes methods | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Mathematics
- Science: Mathematics: Probabilities. Mathematical statistics
| 2006/04/21 | English | 4,624 |
| 2180 | MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization | |
- Medicine: Medicine (General): Computer applications to medicine. Medical informatics
- Science: Biology (General)
- Science: Chemistry: Organic chemistry: Biochemistry
- Science: Mathematics: Instruments and machines: Electronic computers. Computer science
| 2017/09/06 | English | 4,023 |