Protein Kinases: Docking and Homology Modeling Reliability

Article Properties
  • Language
    English
  • DOI (url)
  • Publication Date
    2010/07/27
  • Indian UGC (journal)
  • Refrences
    37
  • Citations
    49
  • Tiziano Tuccinardi Dipartimento di Scienze Farmaceutiche, Università di Pisa, via Bonanno 6, 56126 Pisa, Italy, Department of Biology, Sbarro Institute for Cancer Research and Molecular Medicine, Center for Biotechnology, College of Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, Dipartimento Farmaco Chimico Tecnologico, Universita‘ degli Studi di Siena, Via De Gasperi 2, 53100 Siena, Italy
  • Maurizio Botta Dipartimento di Scienze Farmaceutiche, Università di Pisa, via Bonanno 6, 56126 Pisa, Italy, Department of Biology, Sbarro Institute for Cancer Research and Molecular Medicine, Center for Biotechnology, College of Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, Dipartimento Farmaco Chimico Tecnologico, Universita‘ degli Studi di Siena, Via De Gasperi 2, 53100 Siena, Italy
  • Antonio Giordano Dipartimento di Scienze Farmaceutiche, Università di Pisa, via Bonanno 6, 56126 Pisa, Italy, Department of Biology, Sbarro Institute for Cancer Research and Molecular Medicine, Center for Biotechnology, College of Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, Dipartimento Farmaco Chimico Tecnologico, Universita‘ degli Studi di Siena, Via De Gasperi 2, 53100 Siena, Italy
  • Adriano Martinelli Dipartimento di Scienze Farmaceutiche, Università di Pisa, via Bonanno 6, 56126 Pisa, Italy, Department of Biology, Sbarro Institute for Cancer Research and Molecular Medicine, Center for Biotechnology, College of Science and Technology, Temple University, Philadelphia, Pennsylvania 19122, Dipartimento Farmaco Chimico Tecnologico, Universita‘ degli Studi di Siena, Via De Gasperi 2, 53100 Siena, Italy
Cite
Tuccinardi, Tiziano, et al. “Protein Kinases: Docking and Homology Modeling Reliability”. Journal of Chemical Information and Modeling, vol. 50, no. 8, 2010, pp. 1432-41, https://doi.org/10.1021/ci100161z.
Tuccinardi, T., Botta, M., Giordano, A., & Martinelli, A. (2010). Protein Kinases: Docking and Homology Modeling Reliability. Journal of Chemical Information and Modeling, 50(8), 1432-1441. https://doi.org/10.1021/ci100161z
Tuccinardi, Tiziano, Maurizio Botta, Antonio Giordano, and Adriano Martinelli. “Protein Kinases: Docking and Homology Modeling Reliability”. Journal of Chemical Information and Modeling 50, no. 8 (2010): 1432-41. https://doi.org/10.1021/ci100161z.
1.
Tuccinardi T, Botta M, Giordano A, Martinelli A. Protein Kinases: Docking and Homology Modeling Reliability. Journal of Chemical Information and Modeling. 2010;50(8):1432-41.
Refrences
Title Journal Journal Categories Citations Publication Date
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

Journal of Computational Chemistry
  • Science: Chemistry: General. Including alchemy
  • Science: Chemistry
15,158 2010
QM/MM As a Tool in Fragment Based Drug Discovery. A Cross-Docking, Rescoring Study of Kinase Inhibitors Journal of Chemical Information and Modeling
  • Medicine: Therapeutics. Pharmacology
  • Science: Chemistry: General. Including alchemy
  • Science: Science (General): Cybernetics: Information theory
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Science: Chemistry
37 2009
An Evaluation of Explicit Receptor Flexibility in Molecular Docking Using Molecular Dynamics and Torsion Angle Molecular Dynamics Journal of Chemical Theory and Computation
  • Science: Chemistry: Physical and theoretical chemistry
  • Science: Physics: Atomic physics. Constitution and properties of matter
  • Science: Chemistry: Physical and theoretical chemistry
  • Science: Chemistry
35 2009
Protein−Ligand Docking against Non-Native Protein Conformers Journal of Chemical Information and Modeling
  • Medicine: Therapeutics. Pharmacology
  • Science: Chemistry: General. Including alchemy
  • Science: Science (General): Cybernetics: Information theory
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Science: Chemistry
111 2008
10.1074/jbc.M609721200 Journal of Biological Chemistry
  • Science: Chemistry: Organic chemistry: Biochemistry
2007
Citations
Title Journal Journal Categories Citations Publication Date
Chalcones As Potent Agents Against Staphylococcus aureus: A Computational Approach

Letters in Drug Design & Discovery
  • Medicine: Public aspects of medicine: Toxicology. Poisons
  • Medicine: Therapeutics. Pharmacology
3 2024
Docking-Based Virtual Screening Enables Prioritizing Protein Kinase Inhibitors With In Vitro Phenotypic Activity Against Schistosoma mansoni

Frontiers in Cellular and Infection Microbiology
  • Science: Microbiology
  • Medicine: Internal medicine: Specialties of internal medicine: Immunologic diseases. Allergy
  • Science: Microbiology
9 2022
Molecular docking-based virtual screening: Challenges in hits identification for Anti-SARS-Cov-2 activity

Pharmacia
  • Medicine: Pharmacy and materia medica
  • Medicine: Therapeutics. Pharmacology
1 2022
Exploring the ability of dihydropyrimidine-5-carboxamide and 5-benzyl-2,4-diaminopyrimidine-based analogues for the selective inhibition of L. major dihydrofolate reductase European Journal of Medicinal Chemistry
  • Medicine: Therapeutics. Pharmacology
  • Science: Chemistry: Analytical chemistry
  • Science: Chemistry
22 2021
D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies Journal of Computer-Aided Molecular Design
  • Science: Biology (General)
  • Science: Biology (General)
  • Science: Physics
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Science: Chemistry: Analytical chemistry
  • Science: Chemistry
63 2020
Citations Analysis
The category Science: Chemistry 28 is the most commonly referenced area in studies that cite this article. The first research to cite this article was titled Survey of public domain software for docking simulations and virtual screening and was published in 2011. The most recent citation comes from a 2024 study titled Chalcones As Potent Agents Against Staphylococcus aureus: A Computational Approach. This article reached its peak citation in 2015, with 8 citations. It has been cited in 29 different journals, 13% of which are open access. Among related journals, the Journal of Chemical Information and Modeling cited this research the most, with 12 citations. The chart below illustrates the annual citation trends for this article.
Citations used this article by year