Biological imaging software tools

Article Properties
  • Language
    English
  • DOI (url)
  • Publication Date
    2012/06/28
  • Journal
  • Indian UGC (journal)
  • Refrences
    60
  • Citations
    322
  • Kevin W Eliceiri
  • Michael R Berthold
  • Ilya G Goldberg
  • Luis Ibáñez
  • B S Manjunath
  • Maryann E Martone
  • Robert F Murphy
  • Hanchuan Peng
  • Anne L Plant
  • Badrinath Roysam
  • Nico Stuurman
  • Jason R Swedlow
  • Pavel Tomancak
  • Anne E Carpenter
Article Updates
Cite
Eliceiri, Kevin W, et al. “Biological Imaging Software Tools”. Nature Methods, vol. 9, no. 7, 2012, pp. 697-10, https://doi.org/10.1038/nmeth.2084.
Eliceiri, K. W., Berthold, M. R., Goldberg, I. G., Ibáñez, L., Manjunath, B. S., Martone, M. E., Murphy, R. F., Peng, H., Plant, A. L., Roysam, B., Stuurman, N., Swedlow, J. R., Tomancak, P., & Carpenter, A. E. (2012). Biological imaging software tools. Nature Methods, 9(7), 697-710. https://doi.org/10.1038/nmeth.2084
Eliceiri, Kevin W, Michael R Berthold, Ilya G Goldberg, Luis Ibáñez, B S Manjunath, Maryann E Martone, Robert F Murphy, et al. “Biological Imaging Software Tools”. Nature Methods 9, no. 7 (2012): 697-710. https://doi.org/10.1038/nmeth.2084.
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, et al. Biological imaging software tools. Nature Methods. 2012;9(7):697-710.
Journal Categories
Science
Biology (General)
Science
Chemistry
Analytical chemistry
Science
Chemistry
Organic chemistry
Biochemistry
Refrences
Title Journal Journal Categories Citations Publication Date
Icy: an open bioimage informatics platform for extended reproducible research Nature Methods
  • Science: Chemistry: Organic chemistry: Biochemistry
  • Science: Chemistry: Analytical chemistry
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
907 2012
NIH Image to ImageJ: 25 years of image analysis Nature Methods
  • Science: Chemistry: Organic chemistry: Biochemistry
  • Science: Chemistry: Analytical chemistry
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
40,364 2012
Fiji: an open-source platform for biological-image analysis Nature Methods
  • Science: Chemistry: Organic chemistry: Biochemistry
  • Science: Chemistry: Analytical chemistry
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
36,660 2012
Elastic volume reconstruction from series of ultra-thin microscopy sections Nature Methods
  • Science: Chemistry: Organic chemistry: Biochemistry
  • Science: Chemistry: Analytical chemistry
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
177 2012
BioImageXD: an open, general-purpose and high-throughput image-processing platform Nature Methods
  • Science: Chemistry: Organic chemistry: Biochemistry
  • Science: Chemistry: Analytical chemistry
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
146 2012
Citations
Title Journal Journal Categories Citations Publication Date
Linking acetylated α-Tubulin redistribution to α-Synuclein pathology in brain of Parkinson’s disease patients

npj Parkinson's Disease
  • Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry: Neurology. Diseases of the nervous system
  • Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry
  • Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry
  • Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry
1 2024
Application of unimodal probability distribution models for morphological phenotyping of budding yeast

FEMS Yeast Research
  • Technology: Chemical technology: Biotechnology
  • Science: Microbiology
  • Science: Botany
  • Agriculture: Plant culture
  • Agriculture: Animal culture
2024
Modelling cell shape in 3D structured environments: A quantitative comparison with experiments

PLOS Computational Biology
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
  • Medicine: Medicine (General): Computer applications to medicine. Medical informatics
  • Science: Biology (General)
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
2024
Advancing Biological Research: New Automated Analysis of Immunofluorescence Signals

Applied Sciences
  • Technology: Engineering (General). Civil engineering (General)
  • Science: Biology (General)
  • Science: Physics
  • Science: Chemistry
  • Science: Chemistry: General. Including alchemy
  • Technology: Engineering (General). Civil engineering (General)
  • Science: Chemistry
  • Science: Physics
  • Technology: Technology (General): Industrial engineering. Management engineering
  • Technology: Chemical technology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
  • Technology: Engineering (General). Civil engineering (General)
2024
A Lightweight Browser-Based Tool for Collaborative and Blinded Image Analysis

Journal of Imaging
  • Technology: Photography
  • Medicine: Medicine (General): Computer applications to medicine. Medical informatics
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Technology: Photography
1 2024
Citations Analysis
Category Category Repetition
Science: Biology (General)141
Science: Chemistry: Organic chemistry: Biochemistry117
Science: Biology (General): Cytology44
Science: Science (General)43
Science: Biology (General): Genetics40
Technology: Chemical technology: Biotechnology40
Medicine39
Medicine: Medicine (General): Computer applications to medicine. Medical informatics36
Science: Mathematics: Instruments and machines: Electronic computers. Computer science36
Science36
Medicine: Medicine (General)24
Science: Chemistry: Analytical chemistry23
Science: Chemistry21
Medicine: Medicine (General): Medical technology21
Agriculture: Plant culture17
Agriculture: Animal culture14
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry14
Science: Microbiology13
Science: Physics13
Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials10
Technology: Chemical technology10
Science: Chemistry: General. Including alchemy9
Science: Zoology9
Science: Botany: Plant ecology9
Science: Botany8
Medicine: Medicine (General): Medical physics. Medical radiology. Nuclear medicine7
Medicine: Public aspects of medicine: Toxicology. Poisons6
Science: Natural history (General): Microscopy5
Technology: Engineering (General). Civil engineering (General)5
Technology: Electrical engineering. Electronics. Nuclear engineering: Electric apparatus and materials. Electric circuits. Electric networks5
Technology: Electrical engineering. Electronics. Nuclear engineering: Electronics5
Science: Science (General): Cybernetics: Information theory5
Science: Mathematics: Instruments and machines5
Medicine: Pathology4
Science: Mathematics: Instruments and machines: Electronic computers. Computer science: Computer software4
Science: Chemistry: Physical and theoretical chemistry3
Science: Human anatomy3
Medicine: Therapeutics. Pharmacology3
Medicine: Internal medicine: Specialties of internal medicine: Immunologic diseases. Allergy3
Technology: Photography3
Technology: Electrical engineering. Electronics. Nuclear engineering: Electronics: Computer engineering. Computer hardware3
Medicine: Internal medicine: Neoplasms. Tumors. Oncology. Including cancer and carcinogens3
Social Sciences3
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry: Neurology. Diseases of the nervous system3
Technology: Mechanical engineering and machinery3
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the blood and blood-forming organs2
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the circulatory (Cardiovascular) system2
Medicine: Internal medicine: Special situations and conditions: Industrial medicine. Industrial hygiene2
Medicine: Dermatology2
Science: Physics: Acoustics. Sound2
Medicine: Public aspects of medicine2
Technology: Home economics: Nutrition. Foods and food supply2
Science: Physics: Optics. Light2
Geography. Anthropology. Recreation: Oceanography2
Agriculture: Aquaculture. Fisheries. Angling2
Science: Physiology1
Geography. Anthropology. Recreation: Environmental sciences1
Technology: Environmental technology. Sanitary engineering1
Science: Biology (General): Ecology1
Technology: Technology (General): Industrial engineering. Management engineering1
Technology: Electrical engineering. Electronics. Nuclear engineering1
Technology: Electrical engineering. Electronics. Nuclear engineering: Telecommunication1
Science: Chemistry: Organic chemistry1
Technology: Chemical technology: Polymers and polymer manufacture1
Law: Law in general. Comparative and uniform law. Jurisprudence: Comparative law. International uniform law: Medical legislation1
Technology: Mechanical engineering and machinery: Renewable energy sources1
Technology: Chemical technology: Chemical engineering1
Science: Mathematics: Probabilities. Mathematical statistics1
Science: Geology1
Medicine: Internal medicine: Specialties of internal medicine1
Technology: Chemical technology: Food processing and manufacture1
Medicine: Internal medicine1
Science: Physics: Nuclear and particle physics. Atomic energy. Radioactivity1
Science: Chemistry: Crystallography1
Technology: Engineering (General). Civil engineering (General): Applied optics. Photonics1
Medicine: Internal medicine: Specialties of internal medicine: Nutritional diseases. Deficiency diseases1
Medicine: Other systems of medicine1
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the musculoskeletal system1
Geography. Anthropology. Recreation: Recreation. Leisure: Sports1
Agriculture1
Agriculture: Agriculture (General)1
Science: Biology (General): Evolution1
Philosophy. Psychology. Religion: Philosophy (General)1
Philosophy. Psychology. Religion: Ethics1
Science: Biology (General): Reproduction1
Education: Education (General)1
Education: Theory and practice of education1
Education1
Science: Physiology: Neurophysiology and neuropsychology1
The category Science: Biology (General) 141 is the most commonly referenced area in studies that cite this article. The first research to cite this article was titled CalloseMeasurer: a novel software solution to measure callose deposition and recognise spreading callose patterns and was published in 2012. The most recent citation comes from a 2024 study titled Modelling cell shape in 3D structured environments: A quantitative comparison with experiments. This article reached its peak citation in 2016, with 43 citations. It has been cited in 206 different journals, 27% of which are open access. Among related journals, the Scientific Reports cited this research the most, with 18 citations. The chart below illustrates the annual citation trends for this article.
Citations used this article by year