Fast gapped-read alignment with Bowtie 2

Article Properties
  • Language
    English
  • DOI (url)
  • Publication Date
    2012/03/04
  • Journal
  • Indian UGC (journal)
  • Refrences
    14
  • Citations
    31,549
  • Ben Langmead
  • Steven L Salzberg
Cite
Langmead, Ben, and Steven L Salzberg. “Fast Gapped-Read Alignment With Bowtie 2”. Nature Methods, vol. 9, no. 4, 2012, pp. 357-9, https://doi.org/10.1038/nmeth.1923.
Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods, 9(4), 357-359. https://doi.org/10.1038/nmeth.1923
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nature Methods. 2012;9(4):357-9.
Refrences
Title Journal Journal Categories Citations Publication Date
An integrated semiconductor device enabling non-optical genome sequencing Nature
  • Science: Science (General)
1,234 2011
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation Nature Biotechnology
  • Technology: Chemical technology: Biotechnology
  • Science: Microbiology
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
11,030 2010
Fast and accurate long-read alignment with Burrows–Wheeler transform

Bioinformatics
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
  • Technology: Chemical technology: Biotechnology
  • Medicine: Medicine (General): Computer applications to medicine. Medical informatics
  • Science: Biology (General)
  • Science: Mathematics: Instruments and machines: Electronic computers. Computer science
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
7,750 2010
Accurate and comprehensive sequencing of personal genomes

Genome Research
  • Science: Biology (General)
  • Technology: Chemical technology: Biotechnology
  • Science: Biology (General): Genetics
  • Science: Biology (General): Genetics
130 2010
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Genome Research
  • Science: Biology (General)
  • Technology: Chemical technology: Biotechnology
  • Science: Biology (General): Genetics
  • Science: Biology (General): Genetics
16,739 2010
Refrences Analysis
The category Science: Biology (General) 16 is the most frequently represented among the references in this article. It primarily includes studies from Bioinformatics The chart below illustrates the number of referenced publications per year.
Refrences used by this article by year
Citations
Title Journal Journal Categories Citations Publication Date
Divergent Gut Microbiota: Archaeal and Bacterial Signatures Unveil Unique Patterns in Colombian Cyclists Compared to Weightlifters and Non‐Athletes

Advanced Biology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
  • Technology: Chemical technology: Biotechnology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
2024
Brain‐Decellularized ECM‐Based 3D Myeloid Sarcoma Platform: Mimicking Adaptive Phenotypic Alterations in the Brain

Advanced Healthcare Materials
  • Medicine: Medicine (General): Medical technology
  • Technology: Chemical technology
  • Technology: Chemical technology: Biotechnology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
2024
Chromatin Remodeling in Patient‐Derived Colorectal Cancer Models

Advanced Science
  • Science
  • Science: Chemistry: General. Including alchemy
  • Technology: Chemical technology
  • Science: Chemistry
  • Technology: Chemical technology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
  • Science: Physics
2024
Dampened Regulatory Circuitry of TEAD1/ITGA1/ITGA2 Promotes TGFβ1 Signaling to Orchestrate Prostate Cancer Progression

Advanced Science
  • Science
  • Science: Chemistry: General. Including alchemy
  • Technology: Chemical technology
  • Science: Chemistry
  • Technology: Chemical technology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
  • Science: Physics
2024
The Transpeptidase Sortase A Binds Nucleic Acids and Mediates Mammalian Cell Labeling

Advanced Science
  • Science
  • Science: Chemistry: General. Including alchemy
  • Technology: Chemical technology
  • Science: Chemistry
  • Technology: Chemical technology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
  • Science: Physics
2024
Citations Analysis
Category Category Repetition
Science: Biology (General)10,042
Science: Biology (General): Genetics8,211
Science: Microbiology5,312
Science: Science (General)4,824
Science: Chemistry: Organic chemistry: Biochemistry4,551
Agriculture: Plant culture3,965
Science3,585
Agriculture: Animal culture3,507
Medicine3,194
Science: Biology (General): Cytology3,127
Science: Botany: Plant ecology2,407
Technology: Chemical technology: Biotechnology2,390
Science: Biology (General): Ecology1,852
Medicine: Medicine (General)1,767
Technology: Environmental technology. Sanitary engineering1,697
Science: Biology (General): Evolution1,527
Medicine: Internal medicine: Specialties of internal medicine: Immunologic diseases. Allergy1,358
Science: Zoology1,308
Science: Botany1,116
Medicine: Internal medicine: Infectious and parasitic diseases960
Medicine: Medicine (General): Computer applications to medicine. Medical informatics858
Medicine: Internal medicine: Neoplasms. Tumors. Oncology. Including cancer and carcinogens753
Geography. Anthropology. Recreation: Environmental sciences728
Science: Chemistry702
Agriculture: Agriculture (General)698
Agriculture690
Science: Mathematics: Instruments and machines: Electronic computers. Computer science600
Science: Chemistry: General. Including alchemy572
Agriculture: Aquaculture. Fisheries. Angling551
Geography. Anthropology. Recreation: Oceanography536
Medicine: Public aspects of medicine: Toxicology. Poisons518
Medicine: Therapeutics. Pharmacology394
Agriculture: Animal culture: Veterinary medicine371
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry365
Science: Microbiology: Microbial ecology325
Medicine: Medicine (General): Medical technology301
Technology: Chemical technology: Food processing and manufacture277
Technology: Home economics: Nutrition. Foods and food supply239
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the endocrine glands. Clinical endocrinology227
Science: Physics186
Technology: Engineering (General). Civil engineering (General): Environmental engineering174
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the digestive system. Gastroenterology159
Medicine: Internal medicine: Special situations and conditions: Arctic medicine. Tropical medicine159
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the circulatory (Cardiovascular) system158
Science: Physiology156
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the blood and blood-forming organs154
Science: Chemistry: Analytical chemistry145
Medicine: Public aspects of medicine136
Medicine: Internal medicine: Specialties of internal medicine: Nutritional diseases. Deficiency diseases125
Medicine: Internal medicine124
Agriculture: Forestry106
Technology: Engineering (General). Civil engineering (General)103
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry: Neurology. Diseases of the nervous system91
Medicine: Internal medicine: Special situations and conditions: Industrial medicine. Industrial hygiene88
Technology: Chemical technology82
Science: Natural history (General): General. Including nature conservation, geographical distribution82
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the respiratory system82
Social Sciences: Industries. Land use. Labor: Special industries and trades: Energy industries. Energy policy. Fuel trade79
Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials70
Science: Biology (General): Reproduction70
Technology: Hydraulic engineering: River, lake, and water-supply engineering (General)69
Medicine: Pathology68
Science: Geology63
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry: Neurology. Diseases of the nervous system: Psychiatry58
Technology: Chemical technology: Fuel48
Medicine: Internal medicine: Special situations and conditions: Geriatrics46
Technology: Chemical technology: Polymers and polymer manufacture45
Medicine: Dermatology41
Technology: Environmental technology. Sanitary engineering: Environmental pollution41
Science: Mathematics: Instruments and machines: Electronic computers. Computer science: Computer software36
Medicine: Gynecology and obstetrics33
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the genitourinary system. Urology32
Science: Chemistry: Organic chemistry30
Medicine: Pediatrics30
Technology: Electrical engineering. Electronics. Nuclear engineering: Electronics: Computer engineering. Computer hardware29
Science: Science (General): Cybernetics: Information theory29
Medicine: Surgery29
Technology: Chemical technology: Chemical engineering28
Science: Chemistry: Physical and theoretical chemistry28
Medicine: Dentistry26
Medicine: Other systems of medicine26
Social Sciences25
Philosophy. Psychology. Religion: Psychology24
Science: Mathematics: Probabilities. Mathematical statistics22
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the musculoskeletal system20
Technology: Electrical engineering. Electronics. Nuclear engineering: Electric apparatus and materials. Electric circuits. Electric networks20
Technology: Mechanical engineering and machinery: Renewable energy sources19
Technology: Electrical engineering. Electronics. Nuclear engineering: Electronics18
Agriculture: Animal culture: Cattle: Dairy processing. Dairy products17
Agriculture: Animal culture: Cattle: Dairying17
Medicine: Internal medicine: Specialties of internal medicine17
Science: Physiology: Animal biochemistry17
Law: Law in general. Comparative and uniform law. Jurisprudence: Comparative law. International uniform law: Medical legislation16
Science: Human anatomy15
Auxiliary sciences of history: Archaeology14
Technology: Technology (General): Industrial engineering. Management engineering14
Technology: Electrical engineering. Electronics. Nuclear engineering: Telecommunication13
Technology: Environmental technology. Sanitary engineering: Environmental effects of industries and plants12
Geography. Anthropology. Recreation: Geography (General)12
Medicine: Ophthalmology11
Medicine: Medicine (General): Medical physics. Medical radiology. Nuclear medicine10
Medicine: Surgery: Orthopedic surgery10
Technology: Technology (General): Industrial engineering. Management engineering: Information technology10
Science: Physics: Meteorology. Climatology9
Medicine: Pharmacy and materia medica9
Science: Astronomy8
Medicine: Internal medicine: Special situations and conditions: Sports medicine6
Science: Biology (General): Life6
Bibliography. Library science. Information resources6
Social Sciences: Sociology (General)5
Medicine: Otorhinolaryngology5
Technology: Chemical technology: Fermentation industries. Beverages. Alcohol5
Science: Mathematics: Instruments and machines5
Medicine: Surgery: Anesthesiology5
Education: Education (General)5
Technology: Electrical engineering. Electronics. Nuclear engineering5
Technology: Mechanical engineering and machinery5
Geography. Anthropology. Recreation: Anthropology4
Technology: Technology (General): Industrial engineering. Management engineering: Applied mathematics. Quantitative methods4
Medicine: Internal medicine: Medical emergencies. Critical care. Intensive care. First aid4
Science: Mathematics4
Technology: Chemical technology: Textile bleaching, dyeing, printing, etc.4
Science: Mathematics: Analysis4
Technology3
Technology: Electrical engineering. Electronics. Nuclear engineering: Nuclear engineering. Atomic power2
Law: Law in general. Comparative and uniform law. Jurisprudence: Comparative law. International uniform law: Environmental law2
Geography. Anthropology. Recreation: Physical geography2
Technology: Building construction: Architectural engineering. Structural engineering of buildings2
Geography. Anthropology. Recreation: Recreation. Leisure: Sports2
Technology: Mining engineering. Metallurgy2
Education2
Medicine: Other systems of medicine: Miscellaneous systems and treatments2
General Works2
Science: Physics: Heat: Thermodynamics2
Technology: Engineering (General). Civil engineering (General): Mechanics of engineering. Applied mechanics2
Social Sciences: Industries. Land use. Labor: Labor. Work. Working class: Industrial hygiene. Industrial welfare2
Science: Physiology: Neurophysiology and neuropsychology2
Science: Physics: Electricity and magnetism: Electricity: Plasma physics. Ionized gases1
Education: Special aspects of education1
Education: Theory and practice of education1
Technology: Chemical technology: Oils, fats, and waxes1
Science: Physics: Acoustics. Sound1
Science: Natural history (General): Microscopy1
Naval Science: Naval architecture. Shipbuilding. Marine engineering1
Naval Science1
Technology: Ocean engineering1
Social Sciences: Industries. Land use. Labor: Management. Industrial management1
Technology: Motor vehicles. Aeronautics. Astronautics1
Science: Physics: Optics. Light1
Medicine: Nursing1
Law: Law in general. Comparative and uniform law. Jurisprudence: Comparative law. International uniform law: Criminal law and procedure1
Science: Chemistry: Inorganic chemistry1
Science: Natural history (General)1
Technology: Manufactures: Production management. Operations management1
Technology: Chemical technology: Chemicals: Manufacture, use, etc.1
Auxiliary sciences of history: Diplomatics. Archives. Seals1
The category Science: Biology (General) 10,042 is the most commonly referenced area in studies that cite this article. The first research to cite this article was titled Estimation of the Genetic Substitution Rate of Hanwoo and Holstein Cattle Using Whole Genome Sequencing Data and was published in 1970. The most recent citation comes from a 2024 study titled Enhanced response of soil respiration to experimental warming upon thermokarst formation. This article reached its peak citation in 2022, with 4,742 citations. It has been cited in 2,190 different journals, 26% of which are open access. Among related journals, the Nature Communications cited this research the most, with 1,177 citations. The chart below illustrates the annual citation trends for this article.
Citations used this article by year