Full-length transcriptome assembly from RNA-Seq data without a reference genome
Article Properties
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LanguageEnglish
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DOI (url)
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Publication Date2011/05/15
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Journal
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Indian UGC (journal)
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Refrences35
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Citations13,961
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Manfred G Grabherr
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Brian J Haas
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Moran Yassour
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Joshua Z Levin
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Dawn A Thompson
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Ido Amit
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Xian Adiconis
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Lin Fan
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Raktima Raychowdhury
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Qiandong Zeng
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Zehua Chen
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Evan Mauceli
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Nir Hacohen
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Andreas Gnirke
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Nicholas Rhind
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Federica di Palma
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Bruce W Birren
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Chad Nusbaum
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Kerstin Lindblad-Toh
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Nir Friedman
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Aviv Regev
Cite
Grabherr, Manfred G, et al. “Full-Length Transcriptome Assembly from RNA-Seq Data Without a Reference Genome”. Nature Biotechnology, vol. 29, no. 7, 2011, pp. 644-52, https://doi.org/10.1038/nbt.1883.
Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q., Chen, Z., Mauceli, E., Hacohen, N., Gnirke, A., Rhind, N., di Palma, F., Birren, B. W., Nusbaum, C., Lindblad-Toh, K., … Regev, A. (2011). Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology, 29(7), 644-652. https://doi.org/10.1038/nbt.1883
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology. 2011;29(7):644-52.
Journal Categories
Science
Biology (General)
Science
Chemistry
Organic chemistry
Biochemistry
Science
Microbiology
Technology
Chemical technology
Biotechnology
Refrences
| Title | Journal | Journal Categories | Citations | Publication Date |
|---|---|---|---|---|
| De novo identification of repeat families in large genomes | Bioinformatics |
| 1,240 | 2005 |
| Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation | Nature Biotechnology |
| 11,030 | 2010 |
| Advancing RNA-Seq analysis | Nature Biotechnology |
| 145 | 2010 |
| Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs | Nature Biotechnology |
| 854 | 2010 |
Genome-wide synteny through highly sensitive sequence alignment: Satsuma | Bioinformatics |
| 185 | 2010 |
Refrences Analysis
The category
Science: Biology (General) 42
is the most frequently represented among the references in this article. It primarily includes studies from Bioinformatics The chart below illustrates the number of referenced publications per year.
Refrences used by this article by year
Citations
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|---|---|---|---|---|
Lineage‐Specific CYP80 Expansion and Benzylisoquinoline Alkaloid Diversity in Early‐Diverging Eudicots | Advanced Science |
| 2024 | |
Morphological and genetic evidence suggest gene flow among native and naturalized mint species | American Journal of Botany |
| 2024 | |
The role of biogeographical barriers on the historical dynamics of passerine birds with a circum‐Amazonian distribution | Ecology and Evolution |
| 2024 | |
A pooled‐sample draft genome assembly provides insights into host plant‐specific transcriptional responses of a Solanaceae‐specializing pest, Tupiocoris notatus (Hemiptera: Miridae) | Ecology and Evolution |
| 2024 | |
Gene expression, evolution, and the genetics of electrosensing in the smalltooth sawfish, Pristis pectinata | Ecology and Evolution |
| 2024 |
Citations Analysis
The category
Science: Biology (General) 4,716
is the most commonly referenced area in studies that cite this article. The first research to cite this article was titled Next–generation sequencing and systematics: What can a billion base pairs of DNA sequence data do for you? and was published in 2011. The most recent citation comes from a 2024 study titled Hepatic transcriptome, transcriptional effects and antioxidant responses in Poecilia vivipara exposed to sanitary sewage. This article reached its peak citation in 2022, with 1,696 citations. It has been cited in 1,174 different journals, 25% of which are open access. Among related journals, the PLOS ONE cited this research the most, with 777 citations. The chart below illustrates the annual citation trends for this article.