GROMACS: Fast, flexible, and free

Article Properties
  • Language
    English
  • DOI (url)
  • Publication Date
    2005/10/06
  • Indian UGC (journal)
  • Refrences
    158
  • Citations
    12,370
  • David Van Der Spoel
  • Erik Lindahl
  • Berk Hess
  • Gerrit Groenhof
  • Alan E. Mark
  • Herman J. C. Berendsen
Abstract
Cite
Van Der Spoel, David, et al. “GROMACS: Fast, Flexible, and Free”. Journal of Computational Chemistry, vol. 26, no. 16, 2005, pp. 1701-18, https://doi.org/10.1002/jcc.20291.
Van Der Spoel, D., Lindahl, E., Hess, B., Groenhof, G., Mark, A. E., & Berendsen, H. J. C. (2005). GROMACS: Fast, flexible, and free. Journal of Computational Chemistry, 26(16), 1701-1718. https://doi.org/10.1002/jcc.20291
Van Der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, Berendsen HJC. GROMACS: Fast, flexible, and free. Journal of Computational Chemistry. 2005;26(16):1701-18.
Refrences
Title Journal Journal Categories Citations Publication Date
Brute-Force Molecular Dynamics Simulations of Villin Headpiece:  Comparison with NMR Parameters The Journal of Physical Chemistry B
  • Science: Chemistry: Physical and theoretical chemistry
  • Science: Chemistry: Physical and theoretical chemistry
  • Science: Chemistry
60 2003
10.1103/PhysRevB.66.024116 Physical Review B 2002
Elastic molecular dynamics with self-consistent flexible constraints

The Journal of Chemical Physics
  • Science: Chemistry: Physical and theoretical chemistry
  • Science: Physics: Atomic physics. Constitution and properties of matter
  • Science: Chemistry: Physical and theoretical chemistry
  • Science: Chemistry
23 2000
The solution conformations of amino acids from molecular dynamics simulations of Gly-X-Gly peptides: comparison with NMR parameters

Biochemistry and Cell Biology
  • Science: Biology (General)
  • Science: Biology (General): Cytology
  • Science: Biology (General): Cytology
  • Science: Biology (General)
  • Science: Chemistry: Organic chemistry: Biochemistry
16 1998
Structural Properties of 1,2-Diacyl-sn-glycerol in Bulk and at the Water Interface by Molecular Dynamics Langmuir
  • Science: Chemistry: General. Including alchemy
  • Science: Chemistry: Physical and theoretical chemistry
  • Science: Chemistry
  • Science: Chemistry: Physical and theoretical chemistry
  • Science: Chemistry
11 1995
Citations
Title Journal Journal Categories Citations Publication Date
Barrierless reactions of C2 Criegee intermediates with H2SO4 and their implication to oligomers and new particle formation Journal of Environmental Sciences
  • Geography. Anthropology. Recreation: Environmental sciences
  • Technology: Environmental technology. Sanitary engineering
  • Science: Biology (General): Ecology
2025
A Drop‐By‐Drop Self‐Assembled All‐Natural Hydrogel as a Desensitizer for Rapid and Enduring Management of Dentin Hypersensitivity

Advanced Healthcare Materials
  • Medicine: Medicine (General): Medical technology
  • Technology: Chemical technology
  • Technology: Chemical technology: Biotechnology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
2024
In Silico Discovery of Stapled Peptide Inhibitor Targeting the Nur77‐PPARγ Interaction and Its Anti‐Breast‐Cancer Efficacy

Advanced Science
  • Science
  • Science: Chemistry: General. Including alchemy
  • Technology: Chemical technology
  • Science: Chemistry
  • Technology: Chemical technology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
  • Science: Physics
2024
Non‐Sacrificial Additive Enables a Non‐Passivating Cathode Interface for 4.6 V Li||LiCoO2 Batteries

Advanced Energy Materials
  • Science: Chemistry: Physical and theoretical chemistry
  • Social Sciences: Industries. Land use. Labor: Special industries and trades: Energy industries. Energy policy. Fuel trade
  • Science: Chemistry
  • Science: Physics
  • Science: Physics
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
  • Technology: Chemical technology
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
  • Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials
2024
Enhancement of separation performance for ofloxacin enantiomers by a biphasic recognition chiral extraction system

AIChE Journal
  • Technology: Chemical technology: Chemical engineering
  • Technology: Chemical technology: Chemical engineering
  • Science: Chemistry
2024
Citations Analysis
Category Category Repetition
Science: Chemistry6,478
Science: Biology (General)3,920
Science: Chemistry: Physical and theoretical chemistry3,881
Science: Chemistry: Organic chemistry: Biochemistry2,978
Science: Physics2,171
Science: Chemistry: General. Including alchemy1,941
Science: Physics: Atomic physics. Constitution and properties of matter1,875
Medicine: Therapeutics. Pharmacology812
Technology: Chemical technology801
Science: Chemistry: Analytical chemistry791
Science: Mathematics: Instruments and machines: Electronic computers. Computer science775
Science: Science (General)748
Technology: Electrical engineering. Electronics. Nuclear engineering: Materials of engineering and construction. Mechanics of materials608
Technology: Chemical technology: Polymers and polymer manufacture600
Science578
Medicine496
Technology: Chemical technology: Chemical engineering431
Medicine: Public aspects of medicine: Toxicology. Poisons423
Medicine: Medicine (General): Computer applications to medicine. Medical informatics417
Science: Biology (General): Genetics404
Technology: Chemical technology: Biotechnology326
Science: Biology (General): Cytology303
Science: Chemistry: Organic chemistry296
Science: Chemistry: Crystallography271
Science: Microbiology217
Technology: Engineering (General). Civil engineering (General)189
Technology: Environmental technology. Sanitary engineering184
Medicine: Medicine (General)177
Agriculture: Agriculture (General)176
Science: Science (General): Cybernetics: Information theory175
Agriculture174
Social Sciences: Industries. Land use. Labor: Special industries and trades: Energy industries. Energy policy. Fuel trade145
Technology: Chemical technology: Food processing and manufacture120
Medicine: Medicine (General): Medical technology109
Geography. Anthropology. Recreation: Environmental sciences106
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry91
Technology: Home economics: Nutrition. Foods and food supply87
Science: Physics: Heat: Thermodynamics85
Science: Biology (General): Ecology84
Medicine: Internal medicine: Specialties of internal medicine: Immunologic diseases. Allergy79
Technology: Engineering (General). Civil engineering (General): Environmental engineering77
Science: Mathematics74
Agriculture: Plant culture71
Agriculture: Animal culture64
Technology: Mechanical engineering and machinery: Renewable energy sources60
Medicine: Internal medicine: Infectious and parasitic diseases57
Science: Botany: Plant ecology55
Science: Chemistry: Inorganic chemistry48
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the endocrine glands. Clinical endocrinology40
Medicine: Internal medicine: Neoplasms. Tumors. Oncology. Including cancer and carcinogens39
Science: Physics: Nuclear and particle physics. Atomic energy. Radioactivity38
Medicine: Pharmacy and materia medica38
Science: Geology32
Technology: Mechanical engineering and machinery31
Science: Zoology30
Science: Physiology29
Science: Physics: Electricity and magnetism: Electricity: Plasma physics. Ionized gases27
Science: Botany26
Technology: Engineering (General). Civil engineering (General): Mechanics of engineering. Applied mechanics23
Technology: Mining engineering. Metallurgy22
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the circulatory (Cardiovascular) system19
Science: Physics: Optics. Light19
Science: Mathematics: Instruments and machines18
Science: Mathematics: Instruments and machines: Electronic computers. Computer science: Computer software18
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the blood and blood-forming organs16
Medicine: Internal medicine: Specialties of internal medicine: Nutritional diseases. Deficiency diseases16
Medicine: Other systems of medicine16
Technology: Hydraulic engineering: River, lake, and water-supply engineering (General)15
Technology: Chemical technology: Textile bleaching, dyeing, printing, etc.15
Technology: Electrical engineering. Electronics. Nuclear engineering: Electronics: Computer engineering. Computer hardware15
Technology: Electrical engineering. Electronics. Nuclear engineering: Electric apparatus and materials. Electric circuits. Electric networks14
Science: Biology (General): Evolution11
Technology: Electrical engineering. Electronics. Nuclear engineering: Electronics10
Science: Physics: Meteorology. Climatology10
Science: Mathematics: Probabilities. Mathematical statistics10
Technology: Electrical engineering. Electronics. Nuclear engineering: Nuclear engineering. Atomic power9
Technology: Technology (General): Industrial engineering. Management engineering: Applied mathematics. Quantitative methods9
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the respiratory system8
Medicine: Internal medicine: Special situations and conditions: Industrial medicine. Industrial hygiene8
Technology: Chemical technology: Clay industries. Ceramics. Glass8
Medicine: Internal medicine: Special situations and conditions: Arctic medicine. Tropical medicine7
Medicine: Public aspects of medicine7
Technology: Chemical technology: Oils, fats, and waxes: Petroleum refining. Petroleum products7
Technology: Technology (General): Industrial engineering. Management engineering6
Technology: Building construction: Architectural engineering. Structural engineering of buildings6
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry: Neurology. Diseases of the nervous system6
Agriculture: Aquaculture. Fisheries. Angling6
Science: Geology: Petrology6
Science: Biology (General): Reproduction5
Medicine: Internal medicine5
Agriculture: Animal culture: Veterinary medicine5
Technology: Electrical engineering. Electronics. Nuclear engineering5
Science: Astronomy: Astrophysics5
Medicine: Internal medicine: Special situations and conditions: Geriatrics4
Technology4
Technology: Chemical technology: Fuel4
Technology: Engineering (General). Civil engineering (General): Applied optics. Photonics3
Geography. Anthropology. Recreation: Oceanography3
Medicine: Medicine (General): Medical physics. Medical radiology. Nuclear medicine3
Science: Physiology: Animal biochemistry3
Science: Geology: Mineralogy3
Technology: Manufactures: Production management. Operations management2
Social Sciences: Industries. Land use. Labor: Management. Industrial management2
Technology: Chemical technology: Industrial electrochemistry2
Technology: Technology (General): Industrial engineering. Management engineering: Information technology2
Medicine: Internal medicine: Specialties of internal medicine2
Technology: Electrical engineering. Electronics. Nuclear engineering: Telecommunication2
Medicine: Internal medicine: Neurosciences. Biological psychiatry. Neuropsychiatry: Neurology. Diseases of the nervous system: Psychiatry2
Science: Physics: Acoustics. Sound2
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the digestive system. Gastroenterology2
Medicine: Pathology2
Science: Astronomy2
Medicine: Gynecology and obstetrics1
Social Sciences1
Social Sciences: Sociology (General)1
Technology: Electrical engineering. Electronics. Nuclear engineering: Production of electric energy or power. Powerplants. Central stations1
Technology: Environmental technology. Sanitary engineering: Water supply for domestic and industrial purposes1
Medicine: Dentistry1
Social Sciences: Industries. Land use. Labor: Labor. Work. Working class: Industrial hygiene. Industrial welfare1
Agriculture: Animal culture: Cattle: Dairy processing. Dairy products1
Agriculture: Animal culture: Cattle: Dairying1
Technology: Manufactures1
Education: Education (General)1
Medicine: Pediatrics1
Science: Physics: Descriptive and experimental mechanics1
Science: Human anatomy1
Philosophy. Psychology. Religion: Philosophy (General)1
Technology: Environmental technology. Sanitary engineering: Environmental pollution1
Medicine: Internal medicine: Specialties of internal medicine: Diseases of the genitourinary system. Urology1
Medicine: Surgery: Orthopedic surgery1
Science: Physics: Electricity and magnetism1
Medicine: Other systems of medicine: Miscellaneous systems and treatments1
General Works1
The category Science: Chemistry 6,478 is the most commonly referenced area in studies that cite this article. The first research to cite this article was titled The Origin of Layer Structure Artifacts in Simulations of Liquid Water and was published in 2005. The most recent citation comes from a 2025 study titled Barrierless reactions of C2 Criegee intermediates with H2SO4 and their implication to oligomers and new particle formation. This article reached its peak citation in 2023, with 1,411 citations. It has been cited in 1,391 different journals, 19% of which are open access. Among related journals, the The Journal of Physical Chemistry B cited this research the most, with 824 citations. The chart below illustrates the annual citation trends for this article.
Citations used this article by year