Bioinformatics

Title Publication Date Language Citations
TransGEM: a molecule generation model based on transformer with gene expression data2024/04/17English
Integrative annotation scores of variants for impact on RNA binding protein activities2024/03/29English
MEG-PPIS: a fast protein-protein interaction site prediction method based on multi-scale graph information and equivariant graph neural network2024/04/18English
Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools2024/03/29English
ITree: a user-driven tool for interactive decision-making with classification trees2024/04/18English
GAUSS: a summary-statistics-based R package for accurate estimation of linkage disequilibrium for variants, Gaussian imputation, and TWAS analysis of cosmopolitan cohorts2024/03/29English
CASCC: a co-expression assisted single-cell RNA-seq data clustering method2024/04/25English
For antibody sequence generative modeling, mixture models may be all you need2024/04/23English
A data-adaptive methods in detecting exogenous methyltransferase accessible chromatin in human genome using nanopore sequencing2024/04/13English
NeoAgDT: Optimization of personal neoantigen vaccine composition by digital twin simulation of a cancer cell population2024/04/13English
AbLEF: Antibody Language Ensemble Fusion for thermodynamically empowered property predictions2024/04/16English
Large-scale Structure-Informed multiple sequence alignment of proteins with SIMSApiper2024/04/22English
GradHC: Highly Reliable Gradual Hash-based Clustering for DNA Storage Systems2024/04/22English
Revisiting Drug-Protein Interaction Prediction: A Novel Global-Local Perspective2024/04/22English
scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism2024/04/15English
Topological benchmarking of algorithms to infer Gene Regulatory Networks from Single-Cell RNA-seq Data2024/04/16English
SPEM: a parser for EMBL style flat file database entries.1998/01/01English
Issues in developing integrated genomic databases and application to the human X chromosome.1998/01/01English
Time to defend what we have won2001/04/01English
Corrigendum2002/04/01English
A compressive seeding algorithm in conjunction with reordering-based compression2024/02/20English
imputomics: web server and R package for missing values imputation in metabolomics data2024/02/20English
Cladogramer: incorporating haplotype frequency into cladogram analysis2001/05/01English
Errata2001/03/01English
SECOST: sequence-conformation-structure database for amino acid residues in proteins.1999/06/01English
ViTAL: Vision TrAnsformer based Low coverage SARS-CoV-2 lineage assignment2024/02/19English
Selection among site-dependent structurally constrained substitution models of protein evolution by approximate Bayesian computation2024/02/19English
ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets2024/02/20English
Geometry-complete perceptron networks for 3D molecular graphs2024/02/01English
Fast and scalable querying of eukaryotic linear motifs with gget elm2024/02/20English