Title	Publication Date	Language	Citations
Characterizing alternative splicing effects on protein interaction networks with LINDA	2023/06/01	English
PPAD: a deep learning architecture to predict progression of Alzheimer’s disease	2023/06/01	English
scKINETICS: inference of regulatory velocity with single-cell transcriptomics data	2023/06/01	English
Chromothripsis detection with multiple myeloma patients based on deep graph learning	2023/07/01	English
ChromDL: a next-generation regulatory DNA classifier	2023/06/01	English
PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer	2023/06/01	English
Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein function	2023/06/01	English
COmic: convolutional kernel networks for interpretable end-to-end learning on (multi-)omics data	2023/06/01	English
PlasmoFAB: a benchmark to foster machine learning for Plasmodium falciparum protein antigen candidate prediction	2023/06/01	English
Gemini: memory-efficient integration of hundreds of gene networks with high-order pooling	2023/06/01	English
Genome-wide scans for selective sweeps using convolutional neural networks	2023/06/01	English
RNAMotifComp: a comprehensive method to analyze and identify structurally similar RNA motif families	2023/06/01	English
Phylogenomic branch length estimation using quartets	2023/06/01	English
Trap spaces of multi-valued networks: definition, computation, and applications	2023/06/01	English
Efficiently quantifying DNA methylation for bulk- and single-cell bisulfite data	2023/06/01	English
MolClustPy: a Python package to characterize multivalent biomolecular clusters	2023/06/01	English
Correction to: Targeted metabolomics analyses for brain tumor margin assessment during surgery	2023/01/01	English
Discovering research articles containing evolutionary timetrees by machine learning	2023/01/01	English
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations	2023/02/01	English
Generalizations of the genomic rank distance to indels	2023/02/15	English
A Boolean algebra for genetic variants	2023/01/01	English
A pairwise strategy for imputing predictive features when combining multiple datasets	2022/12/28	English
Biophysical informatics reveals distinctive phenotypic signatures and functional diversity of single-cell lineages	2022/12/28	English
PRAWNS: compact pan-genomic features for whole-genome population genomics	2022/12/29	English
Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny usingMycobacterium tuberculosisisolates	2023/01/01	English
A unified mediation analysis framework for integrative cancer proteogenomics with clinical outcomes	2023/01/01	English
GWAS quality score for evaluating associated regions in GWAS analyses	2023/01/01	English
DiffCircaPipeline: a framework for multifaceted characterization of differential rhythmicity	2023/01/01	English
wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication	2024/04/17	English
Peptide Set Test: a Peptide-Centric Strategy to Infer Differentially Expressed Proteins	2024/04/17	English