Title	Publication Date	Language	Citations
Flexiplex: a versatile demultiplexer and search tool for omics data	2024/02/21	English
EvoAug-TF: extending evolution-inspired data augmentations for genomic deep learning to TensorFlow	2024/02/16	English
SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks	2024/02/01	English
WEBMAP: radiation hybrid mapping on the WWW.	1998/01/01	English
A cell-level discriminative neural network model for diagnosis of blood cancers	2023/09/26	English
Correction to: Online bias-aware disease module mining with ROBUST-Web	2023/09/01	English
BQsupports: systematic assessment of the support and novelty of new biomedical associations	2023/09/01	English
Advancements in computational modelling of biological systems: seventh annual SysMod meeting	2023/09/01	English
BondGraphs.jl: composable energy-based modelling in systems biology	2023/09/19	English
FrameD: framework for DNA-based data storage design, verification, and validation	2023/09/15	English
ActivePPI: quantifying protein–protein interaction network activity with Markov random fields	2023/09/01	English
aenmd: annotating escape from nonsense-mediated decay for transcripts with protein-truncating variants	2023/09/01	English
Protein–ligand binding affinity prediction exploiting sequence constituent homology	2023/08/01	English
scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization	2023/08/01	English
Accessibility of covariance information creates vulnerability in Federated Learning frameworks	2023/08/30	English
diseaseGPS: auxiliary diagnostic system for genetic disorders based on genotype and phenotype	2023/08/30	English
IsoFrog: a reversible jump Markov Chain Monte Carlo feature selection-based method for predicting isoform functions	2023/08/30	English
GraphCpG: imputation of single-cell methylomes based on locus-aware neighboring subgraphs	2023/08/30	English
mbQTL: an R/Bioconductor package for microbial quantitative trait loci (QTL) estimation	2023/09/01	English
ShinyBioHEAT: an interactive shiny app to identify phenotype driver genes in E.coli and B.subtilis	2023/07/31	English
libSBOLj3: a graph-based library for design and data exchange in synthetic biology	2023/08/01	English
Predicting thermostability difference between cellular protein orthologs	2023/08/01	English
DCAlign v1.0: aligning biological sequences using co-evolution models and informed priors	2023/08/30	English
HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes	2023/08/30	English
DecentTree: scalable Neighbour-Joining for the genomic era	2023/08/31	English
dRFEtools: dynamic recursive feature elimination for omics	2023/08/01	English
BEENE: deep learning-based nonlinear embedding improves batch effect estimation	2023/08/01	English
cloneRate: fast estimation of single-cell clonal dynamics using coalescent theory	2023/09/01	English
VoDEx: a Python library for time annotation and management of volumetric functional imaging data	2023/09/01	English
Cardinality optimization in constraint-based modelling: application to human metabolism	2023/09/01	English