| Deep tissue two-photon microscopy | 2005/11/18 | English | 2,689 |
| MutationTaster2: mutation prediction for the deep-sequencing age | 2014/03/28 | English | 2,590 |
| Fast, sensitive and accurate integration of single-cell data with Harmony | 2019/11/18 | English | 2,407 |
| ColabFold: making protein folding accessible to all | 2022/05/30 | English | 2,383 |
| SCENIC: single-cell regulatory network inference and clustering | 2017/10/09 | English | 2,267 |
| MutationTaster evaluates disease-causing potential of sequence alterations | 2010/08/01 | English | 2,170 |
| Orchestrating high-throughput genomic analysis with Bioconductor | 2015/01/29 | English | 2,120 |
| Large-scale automated synthesis of human functional neuroimaging data | 2011/06/26 | English | 2,074 |
| mRNA-Seq whole-transcriptome analysis of a single cell | 2009/04/06 | English | 2,042 |
| Reversed graph embedding resolves complex single-cell trajectories | 2017/08/21 | English | 1,926 |
| A guide to choosing fluorescent proteins | 2005/11/18 | English | 1,895 |
| Direct observation of individual endogenous protein complexes in situ by proximity ligation | 2006/10/29 | English | 1,793 |
| nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation | 2020/12/07 | English | 1,706 |
| MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis | 2015/05/04 | English | 1,700 |
| Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy | 2008/05/29 | English | 1,610 |
| Simultaneous epitope and transcriptome measurement in single cells | 2017/07/31 | English | 1,539 |
| Lifeact: a versatile marker to visualize F-actin | 2008/06/08 | English | 1,516 |
| Semi-supervised learning for peptide identification from shotgun proteomics datasets | 2007/10/21 | English | 1,498 |
| Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm | 2021/02/01 | English | 1,490 |
| ChromHMM: automating chromatin-state discovery and characterization | 2012/02/28 | English | 1,469 |
| MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells | 2007/08/12 | English | 1,459 |
| Smart-seq2 for sensitive full-length transcriptome profiling in single cells | 2013/09/22 | English | 1,450 |
| Differential abundance analysis for microbial marker-gene surveys | 2013/09/29 | English | 1,448 |
| A practical guide to single-molecule FRET | 2008/05/29 | English | 1,422 |
| HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment | 2011/12/25 | English | 1,406 |
| A more efficient method to generate integration-free human iPS cells | 2011/04/03 | English | 1,376 |
| Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM | 2013/05/05 | English | 1,361 |
| Quantifying the local resolution of cryo-EM density maps | 2013/11/10 | English | 1,330 |
| Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators | 2009/11/08 | English | 1,321 |
| Imaging individual mRNA molecules using multiple singly labeled probes | 2008/09/21 | English | 1,304 |