| MetaPhlAn2 for enhanced metagenomic taxonomic profiling | 2015/09/29 | English | 1,285 |
| Independent optical excitation of distinct neural populations | 2014/02/09 | English | 1,272 |
| A linear complexity phasing method for thousands of genomes | 2011/12/04 | English | 1,267 |
| ilastik: interactive machine learning for (bio)image analysis | 2019/09/30 | English | 1,257 |
| Optogenetics | 2010/12/20 | English | 1,197 |
| fMRIPrep: a robust preprocessing pipeline for functional MRI | 2018/12/10 | English | 1,197 |
| A practical guide to hydrogels for cell culture | 2016/04/28 | English | 1,196 |
| Robust single-particle tracking in live-cell time-lapse sequences | 2008/07/20 | English | 1,178 |
| Going deeper than microscopy: the optical imaging frontier in biology | 2010/07/30 | English | 1,170 |
| Binning metagenomic contigs by coverage and composition | 2014/09/14 | English | 1,158 |
| Phased diploid genome assembly with single-molecule real-time sequencing | 2016/10/17 | English | 1,156 |
| Metagenomic microbial community profiling using unique clade-specific marker genes | 2012/06/10 | English | 1,145 |
| Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells | 2014/02/02 | English | 1,138 |
| An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues | 2017/08/28 | English | 1,127 |
| Whispering-gallery-mode biosensing: label-free detection down to single molecules | 2008/06/27 | English | 1,125 |
| Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry | 2014/03/02 | English | 1,108 |
| Predicting effects of noncoding variants with deep learning–based sequence model | 2015/08/24 | English | 1,071 |
| Bayesian community-wide culture-independent microbial source tracking | 2011/07/17 | English | 1,067 |
| SUnSET, a nonradioactive method to monitor protein synthesis | 2009/03/22 | English | 1,054 |
| The CRAPome: a contaminant repository for affinity purification–mass spectrometry data | 2013/07/07 | English | 1,029 |
| Chemically defined generation of human cardiomyocytes | 2014/06/15 | English | 1,017 |
| Absolute quantification by droplet digital PCR versus analog real-time PCR | 2013/09/01 | English | 1,017 |
| Similarity network fusion for aggregating data types on a genomic scale | 2014/01/26 | English | 1,015 |
| Wisdom of crowds for robust gene network inference | 2012/07/15 | English | 1,009 |
| A travel guide to Cytoscape plugins | 2012/11/01 | English | 1,003 |
| An auxin-based degron system for the rapid depletion of proteins in nonplant cells | 2009/11/15 | English | 1,003 |
| A general method to improve fluorophores for live-cell and single-molecule microscopy | 2015/01/19 | English | 975 |
| Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome | 2015/06/29 | English | 972 |
| Highly efficient Cas9-mediated transcriptional programming | 2015/03/02 | English | 968 |
| BreakDancer: an algorithm for high-resolution mapping of genomic structural variation | 2009/08/09 | English | 967 |