| The Maximum Likelihood Approach to Reconstructing Ancestral Character States of Discrete Characters on Phylogenies | 1999/07/01 | English | 758 |
| Likelihood-Based Tests of Topologies in Phylogenetics | 2000/12/01 | English | 749 |
| The Promise of DNA Barcoding for Taxonomy | 2005/10/01 | English | 736 |
| Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence | 2007/02/01 | English | 726 |
| Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes | 2011/05/03 | English | 720 |
| Divergence Time and Evolutionary Rate Estimation with Multilocus Data | 2002/09/01 | English | 704 |
| Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection | 2010/12/27 | English | 694 |
| Strategies to Protect Biological Diversity and the Evolutionary Processes That Sustain It | 2002/03/01 | English | 687 |
| Southern Hemisphere Biogeography Inferred by Event-Based Models: Plant versus Animal Patterns | 2004/04/01 | English | 661 |
| Increased Taxon Sampling Greatly Reduces Phylogenetic Error | 2002/07/01 | English | 657 |
| Stochastic Mapping of Morphological Characters | 2003/04/01 | English | 648 |
| Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times | 2009/06/01 | English | 646 |
| A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models | 2014/02/04 | English | 631 |
| Use of Two-Block Partial Least-Squares to Study Covariation in Shape | 2000/12/01 | English | 602 |
| Constructing a Significance Test for Incongruence | 1995/12/01 | English | 602 |
| Phylogenetic Signal, Evolutionary Process, and Rate | 2008/08/01 | English | 599 |
| Frequentist Properties of Bayesian Posterior Probabilities of Phylogenetic Trees Under Simple and Complex Substitution Models | 2004/12/01 | English | 595 |
| Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation | 2009/06/01 | English | 582 |
| The Perils of DNA Barcoding and the Need for Integrative Taxonomy | 2005/10/01 | English | 566 |
| Evolutionary Rates Analysis of Leguminosae Implicates a Rapid Diversification of Lineages during the Tertiary | 2005/08/01 | English | 558 |
| Potential Applications and Pitfalls of Bayesian Inference of Phylogeny | 2002/09/01 | English | 555 |
| Testing for Phylogenetic Conflict Among Molecular Data Sets in the Tribe Triticeae (Gramineae) | 1996/12/01 | English | 554 |
| Partitioned Bayesian Analyses, Partition Choice, and the Phylogenetic Relationships of Scincid Lizards | 2005/06/01 | English | 547 |
| PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment | 2013/04/05 | English | 546 |
| A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera | 2012/07/26 | English | 545 |
| Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics | 2012/07/05 | English | 542 |
| Delimiting Species without Monophyletic Gene Trees | 2007/12/01 | English | 527 |
| Bayesian Analysis of Biogeography when the Number of Areas is Large | 2013/07/27 | English | 519 |
| Reliability of Bayesian Posterior Probabilities and Bootstrap Frequencies in Phylogenetics | 2003/10/01 | English | 496 |
| Partitioning and Combining Data in Phylogenetic Analysis | 1993/09/01 | English | 490 |