Title	Publication Date	Language	Citations
Mitochondrial DNA Sequence Divergence and Phylogenetic Relationships among Eight Chromosome Races of the Sceloporus Grammicus Complex (Phrynosomatidae) in Central Mexico	1994/09/01	English	481
Selecting the Best-Fit Model of Nucleotide Substitution	2001/08/01		479
Best Practices for Justifying Fossil Calibrations	2011/09/21	English	477
Mapping Spatial Pattern in Biodiversity for Regional Conservation Planning: Where to from Here?	2002/03/01	English	474
Missing Data, Incomplete Taxa, and Phylogenetic Accuracy	2003/08/01	English	468
The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits	2009/04/01	English	448
Computing Bayes Factors Using Thermodynamic Integration	2006/04/01	English	443
Is It Better to Add Taxa or Characters to a Difficult Phylogenetic Problem?	1998/03/01	English	443
Molecular Systematics of the Eastern Fence Lizard (Sceloporus undulatus): A Comparison of Parsimony, Likelihood, and Bayesian Approaches	2002/01/01	English	437
Delimiting Species Using DNA and Morphological Variation and Discordant Species Limits in Spiny Lizards (Sceloporus)	2002/01/01	English	433
Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies	2009/10/15	English	424
A Generalized K Statistic for Estimating Phylogenetic Signal from Shape and Other High-Dimensional Multivariate Data	2014/04/30	English	422
BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics	2011/10/01	English	409
Multiple Sources of Character Information and the Phylogeny of Hawaiian Drosophilids	1997/12/01	English	400
Combining Data Sets with Different Phylogenetic Histories	1998/12/30	English	392
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)	2013/06/14	English	386
Phylogeny and Divergence-Date Estimates of Rapid Radiations in Muroid Rodents Based on Multiple Nuclear Genes	2004/08/01	English	381
Combining Data in Phylogenetic Systematics: An Empirical Approach Using Three Molecular Data Sets in the Solanaceae	1994/12/01	English	374
The Use of Mean Instead of Smallest Interspecific Distances Exaggerates the Size of the “Barcoding Gap” and Leads to Misidentification	2008/10/01	English	372
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language	2016/05/28	English	366
Populations, Genetic Variation, and the Delimitation of Phylogenetic Species	1992/12/01	English	365
The Probabilistic Basis of Jaccard's Index of Similarity	1996/09/01	English	365
Success of Phylogenetic Methods in the Four-Taxon Case	1993/09/01	English	363
Taxonomic Sampling, Phylogenetic Accuracy, and Investigator Bias	1998/03/01	English	356
Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood	2011/03/23	English	351
Phylogenetic Logistic Regression for Binary Dependent Variables	2009/11/04	English	347
Phylogenetics of Flowering Plants Based on Combined Analysis of Plastid atpB and rbcL Gene Sequences	2000/06/01	English	344
Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation	2015/01/19	English	344
Within-Species Variation and Measurement Error in Phylogenetic Comparative Methods	2007/04/01	English	340
Species Trees from Gene Trees: Reconstructing Bayesian Posterior Distributions of a Species Phylogeny Using Estimated Gene Tree Distributions	2007/06/01	English	339