Title	Publication Date	Language	Citations
Evolutionary Covariation in Geometric Morphometric Data: Analyzing Integration, Modularity, and Allometry in a Phylogenetic Context	2013/05/31	English	281
Mapping Mutations on Phylogenies	2002/09/01	English	275
Nexus: An Extensible File Format for Systematic Information	1997/12/01	English	274
Constructing a Significance Test for Incongruence	1995/12/01		272
Performance of Phylogenetic Methods in Simulation	1995/03/01	English	271
A Monte Carlo Approach Successfully Identifies Randomness in Multiple Sequence Alignments : A More Objective Means of Data Exclusion	2009/02/01	English	269
Estimating Species Phylogeny from Gene-Tree Probabilities Despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers	2007/06/01	English	268
Divergence Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia	2011/05/03	English	267
On the Identification of Areas of Endemism	1994/09/01	English	266
Radiation of Extant Cetaceans Driven by Restructuring of the Oceans	2009/10/05	English	264
Quantitative Phyletics and the Evolution of Anurans	1969/03/01	English	264
Integrating Ambiguously Aligned Regions of DNA Sequences in Phylogenetic Analyses Without Violating Positional Homology	2000/12/01	English	264
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering	2018/12/10	English	264
An Extreme Case of Plant–Insect Codiversification: Figs and Fig-Pollinating Wasps	2012/10/04	English	255
Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice	2012/11/08	English	253
The Importance of Data Partitioning and the Utility of Bayes Factors in Bayesian Phylogenetics	2007/08/01	English	253
Comparison of Methods for Molecular Species Delimitation Across a Range of Speciation Scenarios	2018/02/15	English	252
On Applications of Geometric Morphometrics to Studies of Ontogeny and Phylogeny	1998/03/01	English	250
A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?	2009/06/01	English	249
DNA Barcoding Will Often Fail to Discover New Animal Species over Broad Parameter Space	2006/10/01	English	248
Profiling Phylogenetic Informativeness	2007/04/01	English	243
Molecular Phylogeny of the Carnivora (Mammalia): Assessing the Impact of Increased Sampling on Resolving Enigmatic Relationships	2005/04/01	English	240
The Role of Morphological Data in Phylogeny Reconstruction	2004/08/01	English	239
Crayfish Molecular Systematics: Using a Combination of Procedures to Estimate Phylogeny	1996/03/01	English	239
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis	1993/06/01		239
Failure of the ILD to Determine Data Combinability for Slow Loris Phylogeny	2001/05/01		238
Bacterial Species and Speciation	2001/08/01	English	237
Borneo and Indochina are Major Evolutionary Hotspots for Southeast Asian Biodiversity	2014/07/28	English	237
SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees	2011/12/01	English	235
Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms	2013/05/14	English	234