Source Code for Biology and Medicine

Title Publication Date Language Citations
ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets2014/01/24English10
Tools for efficient epistasis detection in genome-wide association study2011/01/04English10
TreeViewJ: An application for viewing and analyzing phylogenetic trees2007/10/31English9
DADOS-Prospective: an open source application for Web-based prospective data collection2006/11/13English9
Gbrowse Moby: a Web-based browser for BioMoby Services2006/10/24English9
Mega2: validated data-reformatting for linkage and association analyses2014/12/01English9
OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences2007/09/18English9
Nephele: genotyping via complete composition vectors and MapReduce2011/08/18English8
Crowdsourcing the Corpasome2013/06/21English8
TagDigger: user-friendly extraction of read counts from GBS and RAD-seq data2016/07/11English8
IHE cross-enterprise document sharing for imaging: interoperability testing software2010/09/21English8
MagiCMicroRna: a web implementation of AgiMicroRna using shiny2015/03/26English8
Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes2013/03/19English8
IPCAPS: an R package for iterative pruning to capture population structure2019/03/20English7
MmPalateMiRNA, an R package compendium illustrating analysis of miRNA microarray data2013/01/08English7
Symmetrical treatment of “Diagnostic and Statistical Manual of Mental Disorders, Fifth Edition”, for major depressive disorders2016/01/19English6
A new tool for prioritization of sequence variants from whole exome sequencing data2016/07/01English6
PrimerView: high-throughput primer design and visualization2015/06/04English6
Flow: Statistics, visualization and informatics for flow cytometry2008/06/17English6
Knowledge Driven Variable Selection (KDVS) – a new approach to enrichment analysis of gene signatures obtained from high–throughput data2013/01/09English6
Automatic Fortran to C++ conversion with FABLE2012/05/28English6
HitKeeper, a generic software package for hit list management2007/03/28English5
SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies2013/03/11English5
Robust dose-response curve estimation applied to high content screening data analysis2014/12/01English5
EEGgui: a program used to detect electroencephalogram anomalies after traumatic brain injury2013/05/21English5
A Perl toolkit for LIMS development2008/03/19English5
Changing computational research. The challenges ahead2012/05/28English5
ParaHaplo: A program package for haplotype-based whole-genome association study using parallel computing2009/10/21English5
LSID Tester, a tool for testing Life Science Identifier resolution services2008/02/18English5
EST-PAC a web package for EST annotation and protein sequence prediction2006/10/12English5