Source Code for Biology and Medicine

Title Publication Date Language Citations
Faunus: An object oriented framework for molecular simulation2008/02/01English32
Molecular-docking study of malaria drug target enzyme transketolase in Plasmodium falciparum 3D7 portends the novel approach to its treatment2015/05/22English32
MIA - A free and open source software for gray scale medical image analysis2013/10/11English29
Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information2010/08/04English25
Membrainy: a ‘smart’, unified membrane analysis tool2015/03/07English23
LocusTrack: Integrated visualization of GWAS results and genomic annotation2015/02/03English23
Epigrass: a tool to study disease spread in complex networks2008/02/26English22
GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction2009/01/26English19
Second generation registry framework2014/06/20English19
The Multiscale Systems Immunology project: software for cell-based immunological simulation2008/04/28English18
FCC – An automated rule-based processing tool for life science data2013/01/11English17
Dockres: a computer program that analyzes the output of virtual screening of small molecules2010/01/14English17
MADAM - An open source meta-analysis toolbox for R and Bioconductor2010/03/01English16
EC2KEGG: a command line tool for comparison of metabolic pathways2014/09/02English16
KinImmerse: Macromolecular VR for NMR ensembles2009/02/17English16
PageRank as a method to rank biomedical literature by importance2015/12/01English16
CRANKITE: A fast polypeptide backbone conformation sampler2008/06/24English16
Genes2WordCloud: a quick way to identify biological themes from gene lists and free text2011/10/13English15
Identifying large sets of unrelated individuals and unrelated markers2014/03/17English15
A bedr way of genomic interval processing2016/12/01English13
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach2019/11/02English13
NET: a new framework for the vectorization and examination of network data2017/02/08English12
GEMBASSY: an EMBOSS associated software package for comprehensive genome analyses2013/08/29English12
Scaffolder - software for manual genome scaffolding2012/05/28English11
TrigNER: automatically optimized biomedical event trigger recognition on scientific documents2014/01/08English11
GenePattern flow cytometry suite2013/07/03English11
SOV_refine: A further refined definition of segment overlap score and its significance for protein structure similarity2018/04/20English11
A generic schema and data collection forms applicable to diverse entomological studies of mosquitoes2016/03/28English11
A traveling salesman approach for predicting protein functions2006/10/12English10
MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments2013/09/03English10