Source Code for Biology and Medicine

Title Publication Date Language Citations
SNIT: SNP identification for strain typing2011/09/08English3
MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads2012/12/01English3
MM2S: personalized diagnosis of medulloblastoma patients and model systems2016/04/11English3
SV-STAT accurately detects structural variation via alignment to reference-based assemblies2016/06/18English3
FLIM-FRET analyzer: open source software for automation of lifetime-based FRET analysis2017/11/03English3
A dedicated database system for handling multi-level data in systems biology2014/07/10English2
Modular and configurable optimal sequence alignment software: Cola2014/06/09English2
Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation2017/02/07English2
MZPAQ: a FASTQ data compression tool2019/06/03English2
CyNetworkBMA: a Cytoscape app for inferring gene regulatory networks2015/11/11English2
Conserved antigenic sites between MERS-CoV and Bat-coronavirus are revealed through sequence analysis2016/03/09English2
Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis2008/09/23English2
CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments2015/08/05English2
[COMMODE] a large-scale database of molecular descriptors using compounds from PubChem2013/11/13English2
PFClust: an optimised implementation of a parameter-free clustering algorithm2014/02/04English2
Creating web applications for spatial epidemiological analysis and mapping in R using Rwui2011/04/01English2
PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols2015/11/19English2
The MERG Suite: Tools for discovering competencies and associated learning resources2008/05/14English2
Genome display tool: visualizing features in complex data sets2007/02/14English2
ProSave: an application for restoring quantitative data to manipulated subsets of protein lists2018/11/12English1
Onco-STS: a web-based laboratory information management system for sample and analysis tracking in oncogenomic experiments2014/12/01English1
VIRAPOPS2 supports the influenza virus reassortments2014/08/17English1
MOSAL: software tools for multiobjective sequence alignment2014/01/08English1
RECOT: a tool for the coordinate transformation of next-generation sequencing reads for comparative genomics and transcriptomics2013/02/26English1
Implementing a new EPR lineshape parameter for organic radicals in carbonaceous matter2013/07/17English1
A CellML simulation compiler and code generator using ODE solving schemes2012/10/19English1
OSPACS: Ultrasound image management system2008/06/20English1
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format2009/07/21English1
The Shivplot: a graphical display for trend elucidation and exploratory analysis of microarray data2006/11/08English1
ParaHaplo 3.0: A program package for imputation and a haplotype-based whole-genome association study using hybrid parallel computing2011/05/24English1