Title	Publication Date	Language	Citations
longmixr: a tool for robust clustering of high-dimensional cross-sectional and longitudinal variables of mixed data types	2024/03/14	English
Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences	2024/03/01	English
GINSA: an accumulator for paired locality and next-generation small ribosomal subunit sequence data	2024/03/19	English
CTEC: a cross-tabulation ensemble clustering approach for single-cell RNA sequencing data analysis	2024/03/29	English
shinyExprPortal: a configurable ‘shiny’ portal for sharing analysis of molecular expression data	2024/03/29	English
Contrastive pre-training and 3D convolution neural network for RNA and small molecule binding affinity prediction	2024/03/20	English
Fast peak error correction algorithms for proteoform identification using top-down tandem mass spectra	2024/03/18	English
TemStaPro: protein thermostability prediction using sequence representations from protein language models	2024/03/20	English
Admix-kit: an integrated toolkit and pipeline for genetic analyses of admixed populations	2024/03/15	English
CONSULT-II: accurate taxonomic identification and profiling using locality-sensitive hashing	2024/03/16	English
Integrating physics in deep learning algorithms: a force field as a PyTorch module	2024/03/21	English
CLAUDIO: automated structural analysis of cross-linking data	2024/03/18	English
MINDG: a drug–target interaction prediction method based on an integrated learning algorithm	2024/03/14	English
PyCoMo: a python package for community metabolic model creation and analysis	2024/03/26	English
PyCoM: a python library for large-scale analysis of residue–residue coevolution data	2024/03/26	English
HyperTMO: a trusted multi-omics integration framework based on hypergraph convolutional network for patient classification	2024/03/26	English
GraphPath: a graph attention model for molecular stratification with interpretability based on the pathway–pathway interaction network	2024/03/26	English
T-S2Inet: Transformer-based sequence-to-image network for accurate nanopore sequence recognition	2024/02/01	English
VariantDetective: an accurate all-in-one pipeline for detecting consensus bacterial SNPs and SVs	2024/02/01	English
Estimation of inbreeding and kinship coefficients via latent identity-by-descent states	2024/02/01	English
CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells	2023/02/01	English
Correction to: Multi-omic integration by machine learning (MIMaL)	2023/04/01	English
BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions	2023/02/16	English
An expectation–maximization framework for comprehensive prediction of isoform-specific functions	2023/03/17	English
GENLIB: new function to simulate haplotype transmission in large complex genealogies	2023/03/01	English
IntestLine: a shiny-based application to map the rolled intestinal tissue onto a line	2023/03/21	English
PATO: genome-wide prediction of lncRNA–DNA triple helices	2023/03/01	English
Correction to: HOMELETTE: a unified interface to homology modelling software	2023/02/01	English
Sensommatic: an efficient pipeline to mine and predict sensory receptor genes in the era of reference-quality genomes	2024/01/01	English
Multi-indicator comparative evaluation for deep learning-based protein sequence design methods	2024/01/23	English