Algorithms for Molecular Biology

Titel Veröffentlichungsdatum Sprache Zitate
ViennaRNA Package 2.02011/11/24English2,736
Jane: a new tool for the cophylogeny reconstruction problem2010/02/03English284
Partition function and base pairing probabilities of RNA heterodimers2006/01/01English170
Space-efficient and exact de Bruijn graph representation based on a Bloom filter2013/01/01English164
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment2008/05/27English139
Identification of alternative topological domains in chromatin2014/01/01English126
Noisy: Identification of problematic columns in multiple sequence alignments2008/06/24English101
A weighted average difference method for detecting differentially expressed genes from microarray data2008/06/26English88
Efficient and accurate P-value computation for Position Weight Matrices2007/12/01English88
Estimation of alternative splicing isoform frequencies from RNA-Seq data2011/04/19English85
An enhanced RNA alignment benchmark for sequence alignment programs2006/10/24English78
Learning from positive examples when the negative class is undetermined- microRNA gene identification2008/01/28English74
Assessing the efficiency of multiple sequence alignment programs2014/03/06English65
A Partial Least Squares based algorithm for parsimonious variable selection2011/12/01English62
Sequence embedding for fast construction of guide trees for multiple sequence alignment2010/05/14English61
Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity2009/04/22English60
A normalization strategy for comparing tag count data2012/04/05English56
Robinson-Foulds Supertrees2010/02/24English54
Data compression for sequencing data2013/01/01English54
RNA folding with hard and soft constraints2016/04/23English53
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies2010/07/15English46
A novel functional module detection algorithm for protein-protein interaction networks2006/12/01English45
Algorithmic approaches to protein-protein interaction site prediction2015/02/15English44
Jaccard index based similarity measure to compare transcription factor binding site models2013/09/30English43
Jabba: hybrid error correction for long sequencing reads2016/05/03English43
Maximum Parsimony on Phylogenetic networks2012/05/02English39
MRL and SuperFine+MRL: new supertree methods2012/01/26English38
Multiple sequence alignment with user-defined anchor points2006/04/19English38
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets2010/12/01English37
BicPAM: Pattern-based biclustering for biomedical data analysis2014/12/01English37