Titel	Veröffentlichungsdatum	Sprache	Zitate
VSEARCH: a versatile open source tool for metagenomics	2016/10/18	English	5,535
scikit-image: image processing in Python	2014/06/19	English	2,729
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction	2014/03/04	English	1,906
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies	2019/07/26	English	1,292
A brief introduction to mixed effects modelling and multi-model inference in ecology	2018/05/23	English	1,124
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities	2015/08/27	English	1,076
Anvi’o: an advanced analysis and visualization platform for ‘omics data	2015/10/08	English	1,000
Using observation-level random effects to model overdispersion in count data in ecology and evolution	2014/10/09	English	737
VirSorter: mining viral signal from microbial genomic data	2015/05/28	English	659
Analyzing mixing systems using a new generation of Bayesian tracer mixing models	2018/06/21	English	655
Swarm: robust and fast clustering method for amplicon-based studies	2014/09/25	English	576
Compact graphical representation of phylogenetic data and metadata with GraPhlAn	2015/06/18	English	514
The state of OA: a large-scale analysis of the prevalence and impact of Open Access articles	2018/02/13	English	464
Hierarchical generalized additive models in ecology: an introduction with mgcv	2019/05/27	English	447
kuenm: an R package for detailed development of ecological niche models using Maxent	2019/02/06	English	443
Random forest as a generic framework for predictive modeling of spatial and spatio-temporal variables	2018/08/29	English	431
PhyloSift: phylogenetic analysis of genomes and metagenomes	2014/01/09	English	408
SDMtoolbox 2.0: the next generation Python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses	2017/12/05	English	408
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences	2014/08/21	English	405
AMAS: a fast tool for alignment manipulation and computing of summary statistics	2016/01/28	English	394
Swarm v2: highly-scalable and high-resolution amplicon clustering	2015/12/10	English	358
Factors affecting the composition of the gut microbiota, and its modulation	2019/08/16	English	322
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms	2014/06/10	English	304
D-GENIES: dot plot large genomes in an interactive, efficient and simple way	2018/06/04	English	299
The impact of artificial intelligence in medicine on the future role of the physician	2019/10/04	English	265
A comparison of observation-level random effect and Beta-Binomial models for modelling overdispersion in Binomial data in ecology & evolution	2015/07/21	English	263
Data reuse and the open data citation advantage	2013/10/01	English	257
iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteineS-nitrosylation sites in proteins	2013/10/03	English	247
MaxEnt’s parameter configuration and small samples: are we paying attention to recommendations? A systematic review	2017/03/14	English	244
Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons	2017/01/11	English	243