Molecular Phylogenetics and Evolution

Title Publication Date Language Citations
MITOS: Improved de novo metazoan mitochondrial genome annotation2013/11/01English3,634
Two Divergent Intragenomic rDNA ITS2 Types within a Monophyletic Lineage of the FungusFusariumAre Nonorthologous1997/02/01English1,550
A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians2011/11/01English950
RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography2015/06/01English935
Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora2011/04/01English639
Primers for a PCR-Based Approach to Mitochondrial Genome Sequencing in Birds and Other Vertebrates1999/07/01English588
S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories2010/08/01English583
Phylogenetic Utility of the External Transcribed Spacer (ETS) of 18S–26S rDNA: Congruence of ETS and ITS Trees ofCalycadenia(Compositae)1998/12/01English455
Toward a Phylogenetic Classification of Primates Based on DNA Evidence Complemented by Fossil Evidence1998/06/01English439
Phylogeography’s past, present, and future: 10 years after Avise, 20002010/01/01English438
Applications of next-generation sequencing to phylogeography and phylogenetics2013/02/01English428
Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)2005/04/01English427
Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species2016/01/01English424
Functional Diversity, Conservation, and Convergence in the Evolution of the α-, β-, and γ-Carbonic Anhydrase Gene Families1996/02/01English418
Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants2007/08/01English387
Molecular Phylogenetics and Biogeography of Tanagers in the GenusRamphocelus(Aves)1996/04/01English382
Phylogenies without roots? A plea for the use of vouchers in molecular phylogenetic studies2008/07/01English377
FASconCAT: Convenient handling of data matrices2010/09/01English372
A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach2007/09/01English357
Relationship between morphological taxonomy and molecular divergence within Crustacea: Proposal of a molecular threshold to help species delimitation2006/08/01English340
Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory2004/09/01English329
A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): Evolution of life-history traits and host switches2008/04/01English329
The Interrelationships of Proseriata (Platyhelminthes: Seriata) Tested with Molecules and Morphology2000/09/01English327
Root Probabilities for Intraspecific Gene Trees under Neutral Coalescent Theory1994/06/01English324
Basal Divergences in Birds and the Phylogenetic Utility of the Nuclear RAG-1 Gene1999/07/01English308
Split decomposition: A new and useful approach to phylogenetic analysis of distance data1992/09/01English307
Phylogeny and Biogeography ofPanaxL. (the Ginseng Genus, Araliaceae): Inferences from ITS Sequences of Nuclear Ribosomal DNA1996/10/01English303
Is there a molecular key to the level of “biological species” in eukaryotes? A DNA guide2009/01/01English303
Use of rRNA Secondary Structure in Phylogenetic Studies to Identify Homologous Positions: An Example of Alignment and Data Presentation from the Frogs1995/09/01English302
A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i2010/07/01English298