Title	Publication Date	Language	Citations
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers	2015/09/01	English	12,958
Recent developments in libxc — A comprehensive library of functionals for density functional theory	2018/01/01	English	367
MOOSE: Enabling massively parallel multiphysics simulation	2020/01/01	English	354
Open data from the first and second observing runs of Advanced LIGO and Advanced Virgo	2021/01/01	English	270
TauFactor: An open-source application for calculating tortuosity factors from tomographic data	2016/01/01	English	247
JDFTx: Software for joint density-functional theory	2017/01/01	English	243
CBE Thermal Comfort Tool: Online tool for thermal comfort calculations and visualizations	2020/07/01	English	154
TSFEL: Time Series Feature Extraction Library	2020/01/01	English	150
Improved version of the PHOBOS Glauber Monte Carlo	2015/09/01	English	143
OpenSeesPy: Python library for the OpenSees finite element framework	2018/01/01	English	135
RTransferEntropy — Quantifying information flow between different time series using effective transfer entropy	2019/07/01	English	97
Qudi: A modular python suite for experiment control and data processing	2017/01/01	English	90
pybliometrics: Scriptable bibliometrics using a Python interface to Scopus	2019/07/01	English	87
ixpeobssim: A simulation and analysis framework for the imaging X-ray polarimetry explorer	2022/07/01	English	77
Baseliner: An open-source, interactive tool for processing sap flux data from thermal dissipation probes	2016/01/01	English	76
Blaze-DEMGPU: Modular high performance DEM framework for the GPU architecture	2016/01/01	English	68
Water cycle algorithm: A detailed standard code	2016/01/01	English	67
TomoWarp2: A local digital volume correlation code	2017/01/01	English	64
tgcd: An R package for analyzing thermoluminescence glow curves	2016/01/01	English	64
NetKet: A machine learning toolkit for many-body quantum systems	2019/07/01	English	64
Sherpa: Robust hyperparameter optimization for machine learning	2020/07/01	English	63
sDNA: 3-d spatial network analysis for GIS, CAD, Command Line & Python	2020/07/01	English	59
pythermalcomfort: A Python package for thermal comfort research	2020/07/01	English	58
Usiigaci: Instance-aware cell tracking in stain-free phase contrast microscopy enabled by machine learning	2019/01/01	English	56
Ecosampler: A new approach to assessing parameter uncertainty in Ecopath with Ecosim	2018/01/01	English	56
Switch 2.0: A modern platform for planning high-renewable power systems	2019/07/01	English	52
pysimm: A python package for simulation of molecular systems	2017/01/01	English	50
A Stepwise Fitting Procedure for automated fitting of Ecopath with Ecosim models	2016/01/01	English	48
FMC—Earthquake focal mechanisms data management, cluster and classification	2019/01/01	English	47
PyLops—A linear-operator Python library for scalable algebra and optimization	2020/01/01	English	46