Journal of Biomedical Semantics

Title Publication Date Language Citations
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability2016/07/04English137
Clinical Natural Language Processing in languages other than English: opportunities and challenges2018/03/30English110
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation2016/09/23English106
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery2014/03/06English87
Extraction of potential adverse drug events from medical case reports2012/12/01English83
BioLemmatizer: a lemmatization tool for morphological processing of biomedical text2012/04/01English59
eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment2015/03/21English55
Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets2017/03/03English52
The Drosophila anatomy ontology2013/10/18English45
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability2018/01/12English45
MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank2017/04/17English42
MIRO: guidelines for minimum information for the reporting of an ontology2018/01/18English40
The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation2014/06/02English39
Semantic annotation in biomedicine: the current landscape2017/09/22English38
Drug target ontology to classify and integrate drug discovery data2017/11/09English36
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung2019/10/24English35
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation2017/06/07English35
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns2015/01/09English34
12 years on – Is the NLM medical text indexer still useful and relevant?2017/02/23English34
DMTO: a realistic ontology for standard diabetes mellitus treatment2018/02/06English34
OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system2018/01/18English34
Moonstone: a novel natural language processing system for inferring social risk from clinical narratives2019/04/11English33
Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies2020/11/16English33
Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens2015/03/25English33
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species2013/08/09English33
Interoperability between phenotypes in research and healthcare terminologies—Investigating partial mappings between HPO and SNOMED CT2016/02/09English31
Dead simple OWL design patterns2017/06/05English30
Extracting a stroke phenotype risk factor from Veteran Health Administration clinical reports: an information content analysis2016/05/10English28
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants2016/11/14English28
The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines2013/11/26English27