| phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data | 2013/04/22 | English | 10,889 |
| FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments | 2010/03/10 | English | 8,460 |
| Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement | 2014/11/19 | English | 5,221 |
| A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species | 2011/05/04 | English | 4,111 |
| REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms | 2011/07/18 | English | 3,995 |
| Leishmaniasis Worldwide and Global Estimates of Its Incidence | 2012/05/31 | English | 3,362 |
| progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement | 2010/06/25 | English | 2,796 |
| Plastic Pollution in the World's Oceans: More than 5 Trillion Plastic Pieces Weighing over 250,000 Tons Afloat at Sea | 2014/12/10 | English | 2,683 |
| Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers | 2008/10/13 | English | 2,356 |
| Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species | 2012/05/31 | English | 2,291 |
| BrainNet Viewer: A Network Visualization Tool for Human Brain Connectomics | 2013/07/04 | English | 2,274 |
| SoilGrids250m: Global gridded soil information based on machine learning | 2017/02/16 | English | 2,170 |
| NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data | 2012/02/01 | English | 2,131 |
| Source Partitioning Using Stable Isotopes: Coping with Too Much Variation | 2010/03/12 | English | 2,113 |
| Global Prevalence of Chronic Kidney Disease – A Systematic Review and Meta-Analysis | 2016/07/06 | English | 2,046 |
| Predicting the Functional Effect of Amino Acid Substitutions and Indels | 2012/10/08 | English | 2,023 |
| Dose-Response Analysis Using R | 2015/12/30 | English | 1,958 |
| Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults | 2010/02/05 | English | 1,898 |
| Yield Trends Are Insufficient to Double Global Crop Production by 2050 | 2013/06/19 | English | 1,853 |
| The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets | 2015/03/04 | English | 1,794 |
| More than 75 percent decline over 27 years in total flying insect biomass in protected areas | 2017/10/18 | English | 1,754 |
| Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types | 2012/02/01 | English | 1,714 |
| An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets | 2007/08/08 | English | 1,711 |
| Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies | 2011/12/14 | English | 1,576 |
| Graphical Tools for Network Meta-Analysis in STATA | 2013/10/03 | English | 1,554 |
| REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing | 2011/09/20 | English | 1,498 |
| Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation | 2010/11/15 | English | 1,461 |
| A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System | 2013/07/08 | English | 1,405 |
| Future Coastal Population Growth and Exposure to Sea-Level Rise and Coastal Flooding - A Global Assessment | 2015/03/11 | English | 1,387 |
| A One Pot, One Step, Precision Cloning Method with High Throughput Capability | 2008/11/05 | English | 1,334 |