Title	Publication Date	Language	Citations
Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences	2015/12/30	English	1,586
Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences	2016/02/29	English	602
Leishmaniasis: a review	2017/05/26	English	593
Epidemiology of mental health problems in COVID-19: a review	2020/06/23	English	547
FastQ Screen: A tool for multi-genome mapping and quality control	2018/08/24	English	538
Current understanding of Alzheimer’s disease diagnosis and treatment	2018/07/31	English	527
Plant adaptation to drought stress	2016/06/30	English	423
BlobTools: Interrogation of genome assemblies	2017/07/31	English	417
Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses	2016/11/02	English	408
GFF Utilities: GffRead and GffCompare	2020/04/28	English	405
Sustainable data analysis with Snakemake	2021/04/19	English	380
FastQ Screen: A tool for multi-genome mapping and quality control	2018/09/17	English	363
HiCUP: pipeline for mapping and processing Hi-C data	2015/11/20	English	331
Recent advances in (therapeutic protein) drug development	2017/02/07	English	300
Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues	2013/09/16	English	282
taxize: taxonomic search and retrieval in R	2013/09/18	English	271
Prediction of the SARS-CoV-2 (2019-nCoV) 3C-like protease (3CLpro) structure: virtual screening reveals velpatasvir, ledipasvir, and other drug repurposing candidates	2020/04/09	English	255
Dietary assessment methods in epidemiological research: current state of the art and future prospects	2017/06/16	English	254
gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler	2020/11/17	English	247
Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis	2017/06/19	English	243
CoNet app: inference of biological association networks using Cytoscape	2016/06/27	English	237
GoodVibes: automated thermochemistry for heterogeneous computational chemistry data	2020/04/24	English	223
The khmer software package: enabling efficient nucleotide sequence analysis	2015/09/25	English	214
All disease begins in the (leaky) gut: role of zonulin-mediated gut permeability in the pathogenesis of some chronic inflammatory diseases	2020/01/31	English	212
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor	2016/10/31	English	209
CyTOF workflow: Differential discovery in high-throughput high-dimensional cytometry datasets	2017/05/26	English	208
The academic, economic and societal impacts of Open Access: an evidence-based review	2016/09/21	English	208
RNA-Seq workflow: gene-level exploratory analysis and differential expression	2015/10/14	English	207
FreeSASA: An open source C library for solvent accessible surface area calculations	2016/02/18	English	206
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR	2016/06/17	English	205