Title	Publication Date	Language	Citations
Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR	2016/07/05	English	969
HiGlass: web-based visual exploration and analysis of genome interaction maps	2018/08/24	English	909
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies	2020/09/14	English	881
Chloroplast genomes: diversity, evolution, and applications in genetic engineering	2016/06/23	English	832
Cytoscape Automation: empowering workflow-based network analysis	2019/09/02	English	790
GoMiner: a resource for biological interpretation of genomic and proteomic data	2003/04/01	English	765
deconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution	2016/02/22	English	728
CIRI: an efficient and unbiased algorithm for de novo circular RNA identification	2015/01/13	English	717
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling	2016/10/07	English	714
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes	2004/01/15	English	694
DNA methylation age of blood predicts all-cause mortality in later life	2015/01/30	English	691
The plant microbiome	2013/06/01	English	691
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community	2016/11/25	English	683
The multidimensional mechanisms of long noncoding RNA function	2017/10/31	English	669
Transcriptome assembly from long-read RNA-seq alignments with StringTie2	2019/12/01	English	668
Circlator: automated circularization of genome assemblies using long sequencing reads	2015/12/01	English	664
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)	2003/08/28	English	654
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq	2016/04/28	English	641
Performance of neural network basecalling tools for Oxford Nanopore sequencing	2019/06/24	English	618
Opportunities and challenges in long-read sequencing data analysis	2020/02/07	English	618
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells	2019/03/19	English	607
Ten things you should know about transposable elements	2018/11/19	English	606
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines	2011/01/01	English	598
Egg cell-specific promoter-controlled CRISPR/Cas9 efficiently generates homozygous mutants for multiple target genes in Arabidopsis in a single generation	2015/07/21	English	593
Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures	2016/11/17	English	590
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data	2003/01/06	English	561
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts	2016/04/27	English	557
Eleven grand challenges in single-cell data science	2020/02/07	English	541
Statistical tests for differential expression in cDNA microarray experiments	2003/04/01	English	533
Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines	2014/03/01	English	517