Title	Publication Date	Language	Citations
A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya	2008/01/01	English	42
Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis	2010/01/01	English	41
How stands the Tree of Life a century and a half after The Origin?	2011/01/01	English	41
Does the central dogma still stand?	2012/01/01	English	41
Selecting biologically informative genes in co-expression networks with a centrality score	2014/01/01	English	40
The fundamental units, processes and patterns of evolution, and the Tree of Life conundrum	2009/01/01	English	38
Opportunities and challenges for digital morphology	2010/01/01	English	38
A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data	2014/01/01	English	36
Novel eukaryotic enzymes modifying cell-surface biopolymers	2010/01/01	English	35
The intracellular region of Notch ligands: does the tail make the difference?	2007/01/01		35
Chaotic expression dynamics implies pluripotency: when theory and experiment meet	2009/01/01	English	35
Structural influence of gene networks on their inference: analysis of C3NET	2011/01/01	English	34
Evolution of DNA ligases of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes: a case of hidden complexity	2009/01/01	English	34
Two new families of the FtsZ-tubulin protein superfamily implicated in membrane remodeling in diverse bacteria and archaea	2010/01/01	English	34
Uniting sex and eukaryote origins in an emerging oxygenic world	2010/01/01	English	33
Telling the whole story in a 10,000-genome world	2011/01/01	English	33
Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and "Korarchaeota"	2007/01/01	English	32
The transition from noncoded to coded protein synthesis: did coding mRNAs arise from stability-enhancing binding partners to tRNA?	2010/01/01	English	32
The new biology: beyond the Modern Synthesis	2007/01/01	English	32
Orphan SelD proteins and selenium-dependent molybdenum hydroxylases	2008/01/01	English	31
Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome	2011/01/01	English	31
Shift in the isoelectric-point of milk proteins as a consequence of adaptive divergence between the milks of mammalian species	2011/01/01	English	30
ALOG domains: provenance of plant homeotic and developmental regulators from the DNA-binding domain of a novel class of DIRS1-type retroposons	2012/01/01	English	30
Proteome changes of Caenorhabditis elegans upon a Staphylococcus aureus infection	2010/01/01	English	30
Lateral transfer of tetrahymanol-synthesizing genes has allowed multiple diverse eukaryote lineages to independently adapt to environments without oxygen	2012/01/01	English	29
Profiling the orphan enzymes	2014/01/01	English	28
Global analyses of Chromosome 17 and 18 genes of lung telocytes compared with mesenchymal stem cells, fibroblasts, alveolar type II cells, airway epithelial cells, and lymphocytes	2015/01/01	English	28
The evolution and functional repertoire of translation proteins following the origin of life	2010/01/01	English	28
Disruption of a Quorum Sensing mechanism triggers tumorigenesis: a simple discrete model corroborated by experiments in mammary cancer stem cells	2010/01/01	English	28
Exceptional error minimization in putative primordial genetic codes	2009/01/01	English	27