BMC Biophysics

Title Publication Date Language Citations
Hierarchies in eukaryotic genome organization: Insights from polymer theory and simulations2011/04/15English11
Origin of multiple intersubunit rotations before EF-G-catalyzed ribosomal translocation through the mRNA with a downstream secondary structure2014/11/19English10
Vesicle biomechanics in a time-varying magnetic field2015/01/21English10
APM_GUI: analyzing particle movement on the cell membrane and determining confinement2012/02/20English10
Membrane microdomains emergence through non-homogeneous diffusion2012/04/30English10
Detection and differentiation of bacterial spores in a mineral matrix by Fourier transform infrared spectroscopy (FTIR) and chemometrical data treatment2011/07/14English10
Mechanism of PhosphoThreonine/Serine Recognition and Specificity for Modular Domains from All-atom Molecular Dynamics2011/05/25English10
Brownian dynamics simulation of analytical ultracentrifugation experiments2011/03/02English9
Probabilistic modeling and analysis of the effects of extra-cellular matrix density on the sizes, shapes, and locations of integrin clusters in adherent cells2011/08/09English9
Self-consistent field theory for the interactions between keratin intermediate filaments2013/09/05English9
Mathematical modelling of the automated FADU assay for the quantification of DNA strand breaks and their repair in human peripheral mononuclear blood cells2014/09/09English9
Activation of signaling receptors: do ligands bind to receptor monomer, dimer, or both?2013/06/03English8
Numerical calculation of protein-ligand binding rates through solution of the Smoluchowski equation using smoothed particle hydrodynamics2015/05/07English8
Langevin dynamics simulations of charged model phosphatidylinositol lipids in the presence of diffusion barriers: toward an atomic level understanding of corralling of PIP2 by protein fences in biological membranes2014/11/26English8
Modeling of RAS complexes supports roles in cancer for less studied partners2017/08/01English8
Using default constraints of the spindle assembly checkpoint to estimate the associated chemical rates2012/01/19English8
Diffusion-controlled reaction rates for two active sites on a sphere2014/06/04English7
Analytical model for macromolecular partitioning during yeast cell division2014/09/23English7
Human S100A5 binds Ca2+ and Cu2+ independently2017/11/22English7
BFPTool: a software tool for analysis of Biomembrane Force Probe experiments2017/02/13English7
Wavelet-based protocols for ion channel electrophysiology2013/03/14English7
Synaptic neuron-astrocyte communication is supported by an order of magnitude analysis of inositol tris-phosphate diffusion at the nanoscale in a model of peri-synaptic astrocyte projection2018/02/12English7
Lipid recognition propensities of amino acids in membrane proteins from atomic resolution data2011/12/01English7
Drift correction for single-molecule imaging by molecular constraint field, a distance minimum metric2015/01/13English7
Long range Debye-Hückel correction for computation of grid-based electrostatic forces between biomacromolecules2014/06/17English6
Exploring in vivo cholesterol-mediated interactions between activated EGF receptors in plasma membrane with single-molecule optical tracking2016/06/24English6
Molecular basis of HHQ biosynthesis: molecular dynamics simulations, enzyme kinetic and surface plasmon resonance studies2013/08/01English6
Prediction of solution properties and dynamics of RNAs by means of Brownian dynamics simulation of coarse-grained models: Ribosomal 5S RNA and phenylalanine transfer RNA2015/12/01English6
Physical constraints on the establishment of intracellular spatial gradients in bacteria2012/08/29English6
Interactions of the amphiphiles arbutin and tryptophan with phosphatidylcholine and phosphatidylethanolamine bilayers in the dry state2013/07/24English6