Molecular Biology and Evolution

Title Publication Date Language Citations
Time Dependency of Molecular Rate Estimates and Systematic Overestimation of Recent Divergence Times2005/04/06English800
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method1997/07/01English788
A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy1997/12/01English784
Testing for Ancient Admixture between Closely Related Populations2011/02/15English783
Bayes or Bootstrap? A Simulation Study Comparing the Performance of Bayesian Markov Chain Monte Carlo Sampling and Bootstrapping in Assessing Phylogenetic Confidence2003/02/01777
Microsatellites Within Genes: Structure, Function, and Evolution2004/02/12English744
The Evolution of Transcriptional Regulation in Eukaryotes2003/05/30English731
The Basic Helix-Loop-Helix Transcription Factor Family in Plants: A Genome-Wide Study of Protein Structure and Functional Diversity2003/04/02726
Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm2006/07/03English698
Comparative Evolutionary Analysis of Chalcone Synthase and Alcohol Dehydrogenase Loci in Arabidopsis, Arabis, and Related Genera (Brassicaceae)2000/10/01English695
Tree of Life Reveals Clock-Like Speciation and Diversification2015/03/03English679
Can three incongruence tests predict when data should be combined?1997/07/01English657
Isolation with Migration Models for More Than Two Populations2009/12/02English642
Phylum-Wide Analysis of SSU rDNA Reveals Deep Phylogenetic Relationships among Nematodes and Accelerated Evolution toward Crown Clades2006/06/21English639
Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis2012/03/14English638
Revisiting the Insect Mitochondrial Molecular Clock: The Mid-Aegean Trench Calibration2010/02/18English633
Paleontological Evidence to Date the Tree of Life2006/10/16English621
Bayesian Selection of Continuous-Time Markov Chain Evolutionary Models2001/06/01English618
Population growth of human Y chromosomes: a study of Y chromosome microsatellites1999/12/01English612
PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R2014/04/16English602
MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline2013/08/16English587
A Molecular Timeline for the Origin of Photosynthetic Eukaryotes2004/05/01English574
Prokaryotic Evolution in Light of Gene Transfer2002/12/01English568
Microsatellite Markers Reveal a Spectrum of Population Structures in the Malaria Parasite Plasmodium falciparum2000/10/01English560
Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences2005/09/21English548
Bayesian Estimation of Species Divergence Times Under a Molecular Clock Using Multiple Fossil Calibrations with Soft Bounds2005/09/21English545
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 32013/05/24English525
Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics2008/04/03English517
POPTREE2: Software for Constructing Population Trees from Allele Frequency Data and Computing Other Population Statistics with Windows Interface2009/12/18English515
A Hidden Markov Model approach to variation among sites in rate of evolution1996/01/01English501